MACSr

MACS: Model-based Analysis for ChIP-Seq


Bioconductor version: Release (3.20)

The Model-based Analysis of ChIP-Seq (MACS) is a widely used toolkit for identifying transcript factor binding sites. This package is an R wrapper of the lastest MACS3.

Author: Philippa Doherty [aut], Qiang Hu [aut, cre]

Maintainer: Qiang Hu <Qiang.Hu at roswellpark.org>

Citation (from within R, enter citation("MACSr")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("MACSr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("MACSr")
MACSr HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews ATACSeq, ChIPSeq, ImmunoOncology, Software
Version 1.14.0
In Bioconductor since BioC 3.13 (R-4.1) (3.5 years)
License BSD_3_clause + file LICENSE
Depends R (>= 4.1.0)
Imports utils, reticulate, S4Vectors, methods, basilisk, ExperimentHub, AnnotationHub
System Requirements
URL
See More
Suggests testthat, knitr, rmarkdown, BiocStyle, MACSdata
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Depends On Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package MACSr_1.14.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64) MACSr_1.14.0.tgz
macOS Binary (arm64) MACSr_1.13.2.tgz
Source Repository git clone https://git.bioconductor.org/packages/MACSr
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/MACSr
Bioc Package Browser https://code.bioconductor.org/browse/MACSr/
Package Short Url https://bioconductor.org/packages/MACSr/
Package Downloads Report Download Stats