MEAL
Perform methylation analysis
Bioconductor version: Release (3.19)
Package to integrate methylation and expression data. It can also perform methylation or expression analysis alone. Several plotting functionalities are included as well as a new region analysis based on redundancy analysis. Effect of SNPs on a region can also be estimated.
Author: Carlos Ruiz-Arenas [aut, cre], Juan R. Gonzalez [aut]
Maintainer: Xavier EscribĂ Montagut <xavier.escriba at isglobal.org>
citation("MEAL")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MEAL")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MEAL")
Expression and Methylation Analysis with MEAL | HTML | R Script |
Methylation Analysis with MEAL | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DNAMethylation, Microarray, Software, WholeGenome |
Version | 1.34.0 |
In Bioconductor since | BioC 3.2 (R-3.2) (9 years) |
License | Artistic-2.0 |
Depends | R (>= 3.6.0), Biobase, MultiDataSet |
Imports | GenomicRanges, limma, vegan, BiocGenerics, minfi, IRanges, S4Vectors, methods, parallel, ggplot2 (>= 2.0.0), permute, Gviz, missMethyl, isva, SummarizedExperiment, SmartSVA, graphics, stats, utils, matrixStats |
System Requirements | |
URL |
See More
Suggests | testthat, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylation450kanno.ilmn12.hg19, knitr, minfiData, BiocStyle, rmarkdown, brgedata |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | MEAL_1.34.0.tar.gz |
Windows Binary | MEAL_1.34.0.zip (64-bit only) |
macOS Binary (x86_64) | MEAL_1.34.0.tgz |
macOS Binary (arm64) | MEAL_1.34.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/MEAL |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MEAL |
Bioc Package Browser | https://code.bioconductor.org/browse/MEAL/ |
Package Short Url | https://bioconductor.org/packages/MEAL/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.19 | Source Archive |