Omixer

Omixer: multivariate and reproducible sample randomization to proactively counter batch effects in omics studies


Bioconductor version: Release (3.19)

Omixer - an Bioconductor package for multivariate and reproducible sample randomization, which ensures optimal sample distribution across batches with well-documented methods. It outputs lab-friendly sample layouts, reducing the risk of sample mixups when manually pipetting randomized samples.

Author: Lucy Sinke [cre, aut]

Maintainer: Lucy Sinke <l.j.sinke at lumc.nl>

Citation (from within R, enter citation("Omixer")):

Installation

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Omixer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Omixer")
my-vignette HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews DataRepresentation, ExperimentalDesign, QualityControl, Software, Visualization
Version 1.14.0
In Bioconductor since BioC 3.12 (R-4.0) (4 years)
License MIT + file LICENSE
Depends R (>= 4.0.0)
Imports dplyr, ggplot2, forcats, tibble, gridExtra, magrittr, readr, tidyselect, grid, stats, stringr
System Requirements
URL
Bug Reports https://github.com/molepi/Omixer/issues
See More
Suggests knitr, rmarkdown, BiocStyle, magick, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Omixer_1.14.0.tar.gz
Windows Binary Omixer_1.14.0.zip
macOS Binary (x86_64) Omixer_1.14.0.tgz
macOS Binary (arm64) Omixer_1.14.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Omixer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Omixer
Bioc Package Browser https://code.bioconductor.org/browse/Omixer/
Package Short Url https://bioconductor.org/packages/Omixer/
Package Downloads Report Download Stats