biobtreeR
Using biobtree tool from R
Bioconductor version: Release (3.20)
The biobtreeR package provides an interface to [biobtree](https://github.com/tamerh/biobtree) tool which covers large set of bioinformatics datasets and allows search and chain mappings functionalities.
Author: Tamer Gur
Maintainer: Tamer Gur <tgur at ebi.ac.uk>
Citation (from within R, enter
citation("biobtreeR")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("biobtreeR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("biobtreeR")| The biobtreeR users guide | HTML | R Script |
| Reference Manual | ||
| LICENSE | Text |
Details
| biocViews | Annotation, Software |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.11 (R-4.0) (4.5 years) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | httr, httpuv, stringi, jsonlite, methods, utils |
| System Requirements | |
| URL | https://github.com/tamerh/biobtreeR |
| Bug Reports | https://github.com/tamerh/biobtreeR/issues |
See More
| Suggests | BiocStyle, knitr, testthat, rmarkdown, markdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | biobtreeR_1.18.0.tar.gz |
| Windows Binary (x86_64) | biobtreeR_1.18.0.zip |
| macOS Binary (x86_64) | biobtreeR_1.18.0.tgz |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/biobtreeR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/biobtreeR |
| Bioc Package Browser | https://code.bioconductor.org/browse/biobtreeR/ |
| Package Short Url | https://bioconductor.org/packages/biobtreeR/ |
| Package Downloads Report | Download Stats |