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flagme

Analysis of Metabolomics GC/MS Data


Bioconductor version: Release (3.20)

Fragment-level analysis of gas chromatography-massspectrometry metabolomics data.

Author: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Maintainer: Mark Robinson <mark.robinson at imls.uzh.ch>, Riccardo Romoli <riccardo.romoli at unifi.it>

Citation (from within R, enter citation("flagme")):

Installation

To install this package, start R (version "4.4") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("flagme")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flagme")
\texttt{flagme}: Fragment-level analysis of \\ GC-MS-based metabolomics data PDF R Script
Using flagme -- Fragment-level analysis of GC-MS-based metabolomics data PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews DifferentialExpression, MassSpectrometry, Software
Version 1.62.0
In Bioconductor since BioC 2.4 (R-2.9) (15.5 years)
License LGPL (>= 2)
Depends gcspikelite, xcms, CAMERA
Imports gplots, graphics, MASS, methods, SparseM, stats, utils
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package flagme_1.62.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/flagme
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/flagme
Bioc Package Browser https://code.bioconductor.org/browse/flagme/
Package Short Url https://bioconductor.org/packages/flagme/
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