igvShiny
igvShiny: a wrapper of Integrative Genomics Viewer (IGV - an interactive tool for visualization and exploration integrated genomic data)
Bioconductor version: Release (3.19)
This package is a wrapper of Integrative Genomics Viewer (IGV). It comprises an htmlwidget version of IGV. It can be used as a module in Shiny apps.
Author: Paul Shannon [aut], Arkadiusz Gladki [aut, cre] , Karolina Scigocka [aut]
Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>
Citation (from within R, enter
citation("igvShiny")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("igvShiny")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("igvShiny")
igvShiny Overview | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | Coverage, Sequencing, ShinyApps, Software |
Version | 1.0.2 |
In Bioconductor since | BioC 3.19 (R-4.4) (< 6 months) |
License | MIT + file LICENSE |
Depends | R (>= 3.5.0), GenomicRanges, methods, shiny |
Imports | BiocGenerics, checkmate, futile.logger, GenomeInfoDbData, htmlwidgets, httr, jsonlite, randomcoloR, RCurl, utils |
System Requirements | |
URL | https://github.com/gladkia/igvShiny https://gladkia.github.io/igvShiny/ |
Bug Reports | https://github.com/gladkia/igvShiny/issues |
See More
Suggests | BiocStyle, GenomicAlignments, knitr, Rsamtools, rtracklayer, RUnit, shinytest2, VariantAnnotation |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | igvShiny_1.0.2.tar.gz |
Windows Binary | |
macOS Binary (x86_64) | igvShiny_1.0.2.tgz |
macOS Binary (arm64) | igvShiny_1.0.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/igvShiny |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/igvShiny |
Bioc Package Browser | https://code.bioconductor.org/browse/igvShiny/ |
Package Short Url | https://bioconductor.org/packages/igvShiny/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.19 | Source Archive |