TxDb.Hsapiens.UCSC.hg19.knownGene

Annotation package for TxDb object(s)

Bioconductor version: Release (3.20)

Exposes an annotation databases generated from UCSC by exposing these as TxDb objects

Author: Marc Carlson, Bioconductor Package Maintainer <maintainer at bioconductor.org> [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("TxDb.Hsapiens.UCSC.hg19.knownGene")):

To install this package, start R (version "4.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TxDb.Hsapiens.UCSC.hg19.knownGene")

For older versions of R, please refer to the appropriate Bioconductor release.


Reference Manual	PDF

biocViews	AnnotationData, Genetics, Homo_sapiens, TxDb
Version	3.2.2
License	Artistic-2.0
Depends	GenomicFeatures(>= 1.21.30)
Imports	AnnotationDbi
System Requirements
URL

Suggests
Linking To
Enhances
Depends On Me	FDb.InfiniumMethylation.hg19, Homo.sapiens, annotation, variants
Imports Me	ChIPQC, ChIPseeker, HiLDA, OutSplice, RareVariantVis, RgnTX, UMI4Cats, appreci8R, decompTumor2Sig, epimutacions, musicatk, nearBynding, rGREAT, uncoverappLib, cinaR, driveR, oncoPredict
Suggests Me	ATACseqQC, AllelicImbalance, AnnotationDbi, BiocParallel, CNVRanger, CRISPRseek, ChIPpeakAnno, EpiCompare, EpiMix, FRASER, GA4GHclient, GA4GHshiny, GENESIS, GRaNIE, GUIDEseq, GenVisR, GenomicAlignments, GenomicFeatures, GenomicInteractionNodes, HelloRanges, MAST, MesKit, MutationalPatterns, NanoMethViz, OUTRIDER, ProteoDisco, PureCN, R3CPET, RiboProfiling, SGSeq, SigFuge, SplicingGraphs, StructuralVariantAnnotation, SummarizedExperiment, TCGAutils, TFEA.ChIP, VariantAnnotation, VariantFiltering, VariantTools, annotatr, beadarray, biomvRCNS, biovizBase, borealis, bumphunter, chromPlot, cpvSNP, derfinderPlot, derfinder, dmrseq, esATAC, gage, geneAttribution, geomeTriD, ggbio, gmapR, gwascat, karyoploteR, pageRank, plotgardener, ramr, regionReport, regionalpcs, rtracklayer, spatzie, svaNUMT, svaRetro, tidyCoverage, trackViewer, transcriptR, tximport, chipenrich.data, Mega2R, MOCHA, SNPassoc
Links To Me

Follow Installation instructions to use this package in your R session.

Source Package	TxDb.Hsapiens.UCSC.hg19.knownGene_3.2.2.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url	https://bioconductor.org/packages/TxDb.Hsapiens.UCSC.hg19.knownGene/
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