RNAseq123
RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR
Bioconductor version: Release (3.20)
R package that supports the F1000Research workflow article on RNA-seq analysis using limma, Glimma and edgeR by Law et al. (2016).
Author: Charity Law, Monther Alhamdoosh, Shian Su, Xueyi Dong, Luyi Tian, Gordon Smyth and Matthew Ritchie
Maintainer: Matthew Ritchie <mritchie at wehi.edu.au>
Citation (from within R, enter
citation("RNAseq123")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RNAseq123")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RNAseq123")| A guide to creating design matrices for gene expression experiments (English version) | HTML | R Script |
| RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR (Chinese version) | HTML | R Script |
| RNA-seq analysis is easy as 1-2-3 with limma, Glimma and edgeR (English version) | HTML | R Script |
Details
| biocViews | GeneExpressionWorkflow, ImmunoOncologyWorkflow, Workflow |
| Version | 1.30.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0), Glimma(>= 1.1.9), limma, edgeR, gplots, RColorBrewer, Mus.musculus, R.utils, TeachingDemos, statmod, BiocWorkflowTools |
| Imports | |
| System Requirements | |
| URL | https://f1000research.com/articles/5-1408/v3 |
See More
| Suggests | knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RNAseq123_1.30.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/RNAseq123 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RNAseq123 |
| Package Short Url | https://bioconductor.org/packages/RNAseq123/ |
| Package Downloads Report | Download Stats |