mouseCHRLOCCYTOLOC        package:mouseCHRLOC        R Documentation

_A_n _a_n_n_o_t_a_t_i_o_n _d_a_t_a _f_i_l_e _f_o_r _C_y_t_o_b_a_n_d _l_o_c_a_t_i_o_n_s _o_n _c_h_r_o_m_o_s_o_m_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     mouseCHRLOCCYTOLOC maps chromosome numbers and the locations of
     cytobands on chromosoms

_D_e_t_a_i_l_s:

     This is an environment object containing key and value pairs. Keys
     are chromosome numbers and values are the locations of cytobands
     on correponding chromosoms. The mapped values are lists of named
     vectors. The names of lists are cytoband ids (e. g. qA2, ...).
     Each list contains a vector of two elements of integers for the
     starting and ending locations of the band on the chromosome
     defined by the key the lists mapped to. Names of the vectors
     indicate whether the value is for the starting or ending location.

     Mappings were based on the following source(s):

     Golden Path:<URL:
     http://gopher5/compbio/annotationSourceData/hgdownload.cse.ucsc.ed
     u/goldenPath/currentGenomes//Mus_musculus/database/>. Built:
     http://gopher5/compbio/annotationSourceData/hgdownload.cse.ucsc.ed
     u/goldenPath/currentGenomes//Mus_musculus/database/

     Package built: Thu May 12 11:06:46 2005

_E_x_a_m_p_l_e_s:

         bands <- as.list(mouseCHRLOCCYTOLOC)
         # cytobands on chromosome number 1
         names(bands[[1]])
         # The start and end locations for one band on chromosome number 1
         bands[[1]][[1]]

