mouseCHRLOCLOCUSID2CHR      package:mouseCHRLOC      R Documentation

_A_n _a_n_n_o_t_a_t_i_o_n _d_a_t_a _f_i_l_e _t_h_a_t _m_a_p_s _L_o_c_u_s_L_i_n_k _i_d_e_n_t_i_f_i_e_r_s _t_o
_c_h_r_o_m_o_s_o_m_e _n_u_m_b_e_r

_D_e_s_c_r_i_p_t_i_o_n:

     mouseCHRLOCLOCUSID2CHR maps LocusLink ids to the chromosome
     numbers the genes represented by the Locuslink ids reside

_D_e_t_a_i_l_s:

     This is an environment object containing key and value pairs. Keys
     are LocusLink ids and values are the corresponding chromosome
     numbers the genes reside. Values are vectors of length 1 or more
     depending on whether a give LocusLink id can be mapped to one or
     more chromosomes.

     Mappings were derived from data provided by:

     Golden Path:<URL:
     http://gopher5/compbio/annotationSourceData/hgdownload.cse.ucsc.ed
     u/goldenPath/currentGenomes//Mus_musculus/database/>. Built:
     http://gopher5/compbio/annotationSourceData/hgdownload.cse.ucsc.ed
     u/goldenPath/currentGenomes//Mus_musculus/database/

     Package built: Thu May 12 11:06:46 2005

_R_e_f_e_r_e_n_c_e_s:

     <URL: http://www.genome.ucsc.edu/goldenPath/hg16/database/>

_E_x_a_m_p_l_e_s:

             require("annotate") || stop("annotate unavailable")
             xx <- as.list(mouseCHRLOCLOCUSID2CHR)
             if(length(xx) > 0){
                     # Get the value of the first LocusLink id
                     xx[1]
                     # Get the values for a few LocusLink ids
                     if(length(xx) >= 3){
                             xx[1:3]
                     }
             }

