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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:Voyager.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings Voyager_1.2.7.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/Voyager.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘Voyager/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘Voyager’ version ‘1.2.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘Voyager’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                        user system elapsed
calculateMultivariate 42.030  0.802  75.836
calculateBivariate    14.787  0.470  26.686
clusterVariograms     13.777  0.446  26.139
plotGeometry          11.096  0.432  21.537
ElbowPlot              8.559  2.188  26.232
plotVariogram          9.121  0.232  16.851
moranPlot              8.775  0.305  16.781
plotLocalResult        7.177  0.246  12.691
plotCrossVariogram     7.133  0.276  13.903
plotCrossVariogramMap  7.057  0.347  14.014
plotCellBin2D          6.570  0.327  12.970
plotCorrelogram        6.511  0.231  12.838
getParams              6.387  0.211  12.208
plotVariogramMap       6.337  0.217  12.004
plotColDataHistogram   6.244  0.275  12.225
plotSpatialFeature     6.204  0.219  11.878
calculateUnivariate    5.524  0.234   9.698
plotColDataBin2D       5.512  0.244  10.888
plotColDataFreqpoly    5.432  0.244  11.064
plotColGraph           5.388  0.220  10.850
spatialReducedDim      4.900  0.214   9.651
plotDimLoadings        4.841  0.222   9.679
moranBounds            4.817  0.180   9.557
multispati_rsp         4.632  0.201   9.441
plotMoranMC            4.482  0.187   8.635
clusterMoranPlot       4.469  0.193   8.983
colFeatureData         4.128  0.199   8.467
listw2sparse           4.008  0.166   8.126
clusterCorrelograms    3.680  0.183   7.040
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK