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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:singleCellTK.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings singleCellTK_2.10.0.tar.gz
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* using log directory ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/singleCellTK.Rcheck’
* using R version 4.3.1 (2023-06-16)
* using platform: aarch64-apple-darwin20 (64-bit)
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.6.7
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘singleCellTK/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘singleCellTK’ version ‘2.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘singleCellTK’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.7Mb
  sub-directories of 1Mb or more:
    extdata   1.5Mb
    shiny     2.9Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking R/sysdata.rda ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                             user system elapsed
plotScDblFinderResults     33.723  0.716  62.224
importExampleData          22.052  2.566  45.813
runScDblFinder             24.172  0.354  43.776
plotDoubletFinderResults   23.572  0.287  40.632
runDoubletFinder           17.794  0.147  31.846
plotBatchCorrCompare       10.330  0.195  19.593
plotScdsHybridResults       8.881  0.197  16.654
plotBcdsResults             7.848  0.175  14.551
plotDecontXResults          7.894  0.080  13.986
plotTSCANClusterDEG         6.843  0.116  12.416
plotEmptyDropsResults       6.636  0.050  11.263
plotEmptyDropsScatter       6.620  0.049  11.966
runDecontX                  6.398  0.071  11.454
runEmptyDrops               6.221  0.044  11.128
plotCxdsResults             6.163  0.092  11.572
plotUMAP                    5.991  0.093  10.643
runUMAP                     5.880  0.080  11.175
plotFindMarkerHeatmap       5.885  0.062  10.572
detectCellOutlier           5.520  0.160  10.124
plotDEGViolin               5.369  0.123   9.840
plotDEGRegression           4.580  0.083   8.305
runSeuratSCTransform        4.400  0.086   8.026
importGeneSetsFromMSigDB    4.028  0.230   7.669
runFindMarker               4.151  0.081   7.398
getFindMarkerTopTable       4.048  0.077   7.433
plotDEGHeatmap              3.529  0.129   6.602
convertSCEToSeurat          3.440  0.192   6.501
plotTSCANPseudotimeHeatmap  2.955  0.049   5.052
plotTSCANClusterPseudo      2.871  0.054   5.195
plotTSCANDimReduceFeatures  2.840  0.046   5.194
plotRunPerCellQCResults     2.775  0.041   5.029
plotTSCANPseudotimeGenes    2.766  0.043   5.031
getEnrichRResult            0.391  0.045   9.759
runEnrichR                  0.355  0.035   9.483
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘spelling.R’
  Running ‘testthat.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.17-bioc-mac-arm64/meat/singleCellTK.Rcheck/00check.log’
for details.