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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data dreamlet
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* checking for file ‘dreamlet/DESCRIPTION’ ... OK
* preparing ‘dreamlet’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to process help pages
Loading required namespace: variancePartition
Loading required namespace: dreamlet
* saving partial Rd database
* creating vignettes ... ERROR
--- re-building ‘cell_covs.Rmd’ using rmarkdown

Quitting from lines 57-79 [preprocess.data] (cell_covs.Rmd)
Error: processing vignette 'cell_covs.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'rowSums2': unable to find an inherited method for function 'counts' for signature '"tbl_df"'
--- failed re-building ‘cell_covs.Rmd’

--- re-building ‘dreamlet.Rmd’ using rmarkdown

Quitting from lines 83-106 [preprocess.data] (dreamlet.Rmd)
Error: processing vignette 'dreamlet.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'rowSums2': unable to find an inherited method for function 'counts' for signature '"tbl_df"'
--- failed re-building ‘dreamlet.Rmd’

--- re-building ‘errors.Rmd’ using rmarkdown
--- finished re-building ‘errors.Rmd’

--- re-building ‘h5ad_on_disk.Rmd’ using rmarkdown
--- finished re-building ‘h5ad_on_disk.Rmd’

--- re-building ‘mashr.Rmd’ using rmarkdown
--- finished re-building ‘mashr.Rmd’

--- re-building ‘non_lin_eff.Rmd’ using rmarkdown

Quitting from lines 57-89 [preprocess.data] (non_lin_eff.Rmd)
Error: processing vignette 'non_lin_eff.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'rowSums2': unable to find an inherited method for function 'counts' for signature '"tbl_df"'
--- failed re-building ‘non_lin_eff.Rmd’

SUMMARY: processing the following files failed:
  ‘cell_covs.Rmd’ ‘dreamlet.Rmd’ ‘non_lin_eff.Rmd’

Error: Vignette re-building failed.
Execution halted