Back to Books build report for BioC 3.22

This page was generated on 2025-08-15 14:30 -0400 (Fri, 15 Aug 2025).

R packages installed on nebbiolo2


                                   LibPath                                       Version   Built
abind                              /home/biocbuild/bbs-3.22-books/R/site-library 1.4-8     4.5.1
aggregation                        /home/biocbuild/bbs-3.22-books/R/site-library 1.0.1     4.5.1
alabaster.base                     /home/biocbuild/bbs-3.22-books/R/site-library 1.9.5     4.5.1
alabaster.matrix                   /home/biocbuild/bbs-3.22-books/R/site-library 1.9.0     4.5.1
alabaster.ranges                   /home/biocbuild/bbs-3.22-books/R/site-library 1.9.1     4.5.1
alabaster.sce                      /home/biocbuild/bbs-3.22-books/R/site-library 1.9.0     4.5.1
alabaster.schemas                  /home/biocbuild/bbs-3.22-books/R/site-library 1.9.0     4.5.1
alabaster.se                       /home/biocbuild/bbs-3.22-books/R/site-library 1.9.0     4.5.1
annotate                           /home/biocbuild/bbs-3.22-books/R/site-library 1.87.0    4.5.1
AnnotationDbi                      /home/biocbuild/bbs-3.22-books/R/site-library 1.71.1    4.5.1
AnnotationFilter                   /home/biocbuild/bbs-3.22-books/R/site-library 1.33.0    4.5.1
AnnotationHub                      /home/biocbuild/bbs-3.22-books/R/site-library 3.99.6    4.5.1
apcluster                          /home/biocbuild/bbs-3.22-books/R/site-library 1.4.13    4.5.1
askpass                            /home/biocbuild/bbs-3.22-books/R/site-library 1.2.1     4.5.1
assertthat                         /home/biocbuild/bbs-3.22-books/R/site-library 0.2.1     4.5.1
assorthead                         /home/biocbuild/bbs-3.22-books/R/site-library 1.3.6     4.5.1
AUCell                             /home/biocbuild/bbs-3.22-books/R/site-library 1.31.0    4.5.1
babelgene                          /home/biocbuild/bbs-3.22-books/R/site-library 22.9      4.5.1
backports                          /home/biocbuild/bbs-3.22-books/R/site-library 1.5.0     4.5.1
base64enc                          /home/biocbuild/bbs-3.22-books/R/site-library 0.1-3     4.5.1
basilisk                           /home/biocbuild/bbs-3.22-books/R/site-library 1.21.5    4.5.1
basilisk.utils                     /home/biocbuild/bbs-3.22-books/R/site-library 1.21.2    4.5.1
batchelor                          /home/biocbuild/bbs-3.22-books/R/site-library 1.25.0    4.5.1
beachmat                           /home/biocbuild/bbs-3.22-books/R/site-library 2.25.4    4.5.1
beeswarm                           /home/biocbuild/bbs-3.22-books/R/site-library 0.4.0     4.5.1
benchmarkme                        /home/biocbuild/bbs-3.22-books/R/site-library 1.0.8     4.5.1
benchmarkmeData                    /home/biocbuild/bbs-3.22-books/R/site-library 1.0.4     4.5.1
BH                                 /home/biocbuild/bbs-3.22-books/R/site-library 1.87.0-1  4.5.1
Biobase                            /home/biocbuild/bbs-3.22-books/R/site-library 2.69.0    4.5.1
BiocBaseUtils                      /home/biocbuild/bbs-3.22-books/R/site-library 1.11.2    4.5.1
BiocBookDemo                       /home/biocbuild/bbs-3.22-books/R/site-library 1.7.0     4.5.1
BiocFileCache                      /home/biocbuild/bbs-3.22-books/R/site-library 2.99.5    4.5.1
BiocGenerics                       /home/biocbuild/bbs-3.22-books/R/site-library 0.55.1    4.5.1
BiocIO                             /home/biocbuild/bbs-3.22-books/R/site-library 1.19.0    4.5.1
BiocManager                        /home/biocbuild/bbs-3.22-books/R/site-library 1.30.26   4.5.1
BiocNeighbors                      /home/biocbuild/bbs-3.22-books/R/site-library 2.3.1     4.5.1
BiocParallel                       /home/biocbuild/bbs-3.22-books/R/site-library 1.43.4    4.5.1
BiocSingular                       /home/biocbuild/bbs-3.22-books/R/site-library 1.25.0    4.5.1
BiocStyle                          /home/biocbuild/bbs-3.22-books/R/site-library 2.37.1    4.5.1
BiocVersion                        /home/biocbuild/bbs-3.22-books/R/site-library 3.22.0    4.5.1
biomaRt                            /home/biocbuild/bbs-3.22-books/R/site-library 2.65.0    4.5.1
Biostrings                         /home/biocbuild/bbs-3.22-books/R/site-library 2.77.2    4.5.1
biovizBase                         /home/biocbuild/bbs-3.22-books/R/site-library 1.57.1    4.5.1
bit                                /home/biocbuild/bbs-3.22-books/R/site-library 4.6.0     4.5.1
bit64                              /home/biocbuild/bbs-3.22-books/R/site-library 4.6.0-1   4.5.1
bitops                             /home/biocbuild/bbs-3.22-books/R/site-library 1.0-9     4.5.1
blob                               /home/biocbuild/bbs-3.22-books/R/site-library 1.2.4     4.5.1
bluster                            /home/biocbuild/bbs-3.22-books/R/site-library 1.19.0    4.5.1
bookdown                           /home/biocbuild/bbs-3.22-books/R/site-library 0.43      4.5.1
BSgenome                           /home/biocbuild/bbs-3.22-books/R/site-library 1.77.1    4.5.1
BSgenome.Hsapiens.UCSC.hg38        /home/biocbuild/bbs-3.22-books/R/site-library 1.4.5     4.5.1
bslib                              /home/biocbuild/bbs-3.22-books/R/site-library 0.9.0     4.5.1
BumpyMatrix                        /home/biocbuild/bbs-3.22-books/R/site-library 1.17.0    4.5.1
cachem                             /home/biocbuild/bbs-3.22-books/R/site-library 1.1.0     4.5.1
Cairo                              /home/biocbuild/bbs-3.22-books/R/site-library 1.6-2     4.5.1
calibrate                          /home/biocbuild/bbs-3.22-books/R/site-library 1.7.7     4.5.1
caTools                            /home/biocbuild/bbs-3.22-books/R/site-library 1.18.3    4.5.1
celldex                            /home/biocbuild/bbs-3.22-books/R/site-library 1.19.0    4.5.1
cellranger                         /home/biocbuild/bbs-3.22-books/R/site-library 1.1.0     4.5.1
checkmate                          /home/biocbuild/bbs-3.22-books/R/site-library 2.3.2     4.5.1
ChIPpeakAnno                       /home/biocbuild/bbs-3.22-books/R/site-library 3.43.1    4.5.1
chipseqDBData                      /home/biocbuild/bbs-3.22-books/R/site-library 1.25.0    4.5.1
circlize                           /home/biocbuild/bbs-3.22-books/R/site-library 0.4.16    4.5.1
cli                                /home/biocbuild/bbs-3.22-books/R/site-library 3.6.5     4.5.1
clipr                              /home/biocbuild/bbs-3.22-books/R/site-library 0.8.0     4.5.1
clue                               /home/biocbuild/bbs-3.22-books/R/site-library 0.3-66    4.5.1
ClusterR                           /home/biocbuild/bbs-3.22-books/R/site-library 1.3.3     4.5.1
clustree                           /home/biocbuild/bbs-3.22-books/R/site-library 0.5.1     4.5.1
CodeDepends                        /home/biocbuild/bbs-3.22-books/R/site-library 0.6.6     4.5.1
colorspace                         /home/biocbuild/bbs-3.22-books/R/site-library 2.1-1     4.5.1
colourpicker                       /home/biocbuild/bbs-3.22-books/R/site-library 1.3.0     4.5.1
combinat                           /home/biocbuild/bbs-3.22-books/R/site-library 0.0-8     4.5.1
commonmark                         /home/biocbuild/bbs-3.22-books/R/site-library 2.0.0     4.5.1
ComplexHeatmap                     /home/biocbuild/bbs-3.22-books/R/site-library 2.25.2    4.5.1
coop                               /home/biocbuild/bbs-3.22-books/R/site-library 0.6-3     4.5.1
coro                               /home/biocbuild/bbs-3.22-books/R/site-library 1.1.0     4.5.1
corral                             /home/biocbuild/bbs-3.22-books/R/site-library 1.19.0    4.5.1
cowplot                            /home/biocbuild/bbs-3.22-books/R/site-library 1.2.0     4.5.1
cpp11                              /home/biocbuild/bbs-3.22-books/R/site-library 0.5.2     4.5.1
crayon                             /home/biocbuild/bbs-3.22-books/R/site-library 1.5.3     4.5.1
crosstalk                          /home/biocbuild/bbs-3.22-books/R/site-library 1.2.1     4.5.1
csaw                               /home/biocbuild/bbs-3.22-books/R/site-library 1.43.1    4.5.1
csawBook                           /home/biocbuild/bbs-3.22-books/R/site-library 1.17.0    4.5.1
curl                               /home/biocbuild/bbs-3.22-books/R/site-library 6.4.0     4.5.1
data.table                         /home/biocbuild/bbs-3.22-books/R/site-library 1.17.8    4.5.1
DBI                                /home/biocbuild/bbs-3.22-books/R/site-library 1.2.3     4.5.1
dbplyr                             /home/biocbuild/bbs-3.22-books/R/site-library 2.5.0     4.5.1
DelayedArray                       /home/biocbuild/bbs-3.22-books/R/site-library 0.35.2    4.5.1
DelayedMatrixStats                 /home/biocbuild/bbs-3.22-books/R/site-library 1.31.0    4.5.1
deldir                             /home/biocbuild/bbs-3.22-books/R/site-library 2.0-4     4.5.1
dendextend                         /home/biocbuild/bbs-3.22-books/R/site-library 1.19.1    4.5.1
densvis                            /home/biocbuild/bbs-3.22-books/R/site-library 1.19.0    4.5.1
DEoptimR                           /home/biocbuild/bbs-3.22-books/R/site-library 1.1-4     4.5.1
dichromat                          /home/biocbuild/bbs-3.22-books/R/site-library 2.0-0.1   4.5.1
diffHic                            /home/biocbuild/bbs-3.22-books/R/site-library 1.41.0    4.5.1
digest                             /home/biocbuild/bbs-3.22-books/R/site-library 0.6.37    4.5.1
dir.expiry                         /home/biocbuild/bbs-3.22-books/R/site-library 1.17.0    4.5.1
DNAZooData                         /home/biocbuild/bbs-3.22-books/R/site-library 1.9.0     4.5.1
doParallel                         /home/biocbuild/bbs-3.22-books/R/site-library 1.0.17    4.5.1
dplyr                              /home/biocbuild/bbs-3.22-books/R/site-library 1.1.4     4.5.1
dqrng                              /home/biocbuild/bbs-3.22-books/R/site-library 0.4.1     4.5.1
DropletTestFiles                   /home/biocbuild/bbs-3.22-books/R/site-library 1.19.0    4.5.1
DropletUtils                       /home/biocbuild/bbs-3.22-books/R/site-library 1.29.4    4.5.1
DT                                 /home/biocbuild/bbs-3.22-books/R/site-library 0.33      4.5.1
dynamicTreeCut                     /home/biocbuild/bbs-3.22-books/R/site-library 1.63-1    4.5.1
edgeR                              /home/biocbuild/bbs-3.22-books/R/site-library 4.7.3     4.5.1
elasticnet                         /home/biocbuild/bbs-3.22-books/R/site-library 1.3       4.5.1
ellmer                             /home/biocbuild/bbs-3.22-books/R/site-library 0.3.0     4.5.1
EnsDb.Hsapiens.v86                 /home/biocbuild/bbs-3.22-books/R/site-library 2.99.0    4.5.1
ensembldb                          /home/biocbuild/bbs-3.22-books/R/site-library 2.33.1    4.5.1
evaluate                           /home/biocbuild/bbs-3.22-books/R/site-library 1.0.4     4.5.1
ExperimentHub                      /home/biocbuild/bbs-3.22-books/R/site-library 2.99.5    4.5.1
farver                             /home/biocbuild/bbs-3.22-books/R/site-library 2.1.2     4.5.1
fastcluster                        /home/biocbuild/bbs-3.22-books/R/site-library 1.3.0     4.5.1
fastICA                            /home/biocbuild/bbs-3.22-books/R/site-library 1.2-7     4.5.1
fastmap                            /home/biocbuild/bbs-3.22-books/R/site-library 1.2.0     4.5.1
filelock                           /home/biocbuild/bbs-3.22-books/R/site-library 1.0.3     4.5.1
FNN                                /home/biocbuild/bbs-3.22-books/R/site-library 1.1.4.1   4.5.1
fontawesome                        /home/biocbuild/bbs-3.22-books/R/site-library 0.5.3     4.5.1
forcats                            /home/biocbuild/bbs-3.22-books/R/site-library 1.0.0     4.5.1
foreach                            /home/biocbuild/bbs-3.22-books/R/site-library 1.5.2     4.5.1
formatR                            /home/biocbuild/bbs-3.22-books/R/site-library 1.14      4.5.1
Formula                            /home/biocbuild/bbs-3.22-books/R/site-library 1.2-5     4.5.1
fourDNData                         /home/biocbuild/bbs-3.22-books/R/site-library 1.9.0     4.5.1
fs                                 /home/biocbuild/bbs-3.22-books/R/site-library 1.6.6     4.5.1
futile.logger                      /home/biocbuild/bbs-3.22-books/R/site-library 1.4.3     4.5.1
futile.options                     /home/biocbuild/bbs-3.22-books/R/site-library 1.0.1     4.5.1
future                             /home/biocbuild/bbs-3.22-books/R/site-library 1.67.0    4.5.1
future.apply                       /home/biocbuild/bbs-3.22-books/R/site-library 1.20.0    4.5.1
generics                           /home/biocbuild/bbs-3.22-books/R/site-library 0.1.4     4.5.1
GenomeInfoDb                       /home/biocbuild/bbs-3.22-books/R/site-library 1.45.9    4.5.1
GenomeInfoDbData                   /home/biocbuild/bbs-3.22-books/R/site-library 1.2.14    4.5.1
GenomicAlignments                  /home/biocbuild/bbs-3.22-books/R/site-library 1.45.2    4.5.1
GenomicFeatures                    /home/biocbuild/bbs-3.22-books/R/site-library 1.61.6    4.5.1
GenomicInteractions                /home/biocbuild/bbs-3.22-books/R/site-library 1.43.1    4.5.1
GenomicRanges                      /home/biocbuild/bbs-3.22-books/R/site-library 1.61.1    4.5.1
GetoptLong                         /home/biocbuild/bbs-3.22-books/R/site-library 1.0.5     4.5.1
GGally                             /home/biocbuild/bbs-3.22-books/R/site-library 2.3.0     4.5.1
ggbeeswarm                         /home/biocbuild/bbs-3.22-books/R/site-library 0.7.2     4.5.1
ggbio                              /home/biocbuild/bbs-3.22-books/R/site-library 1.57.1    4.5.1
ggforce                            /home/biocbuild/bbs-3.22-books/R/site-library 0.5.0     4.5.1
ggplot2                            /home/biocbuild/bbs-3.22-books/R/site-library 3.5.2     4.5.1
ggraph                             /home/biocbuild/bbs-3.22-books/R/site-library 2.2.1     4.5.1
ggrastr                            /home/biocbuild/bbs-3.22-books/R/site-library 1.0.2     4.5.1
ggrepel                            /home/biocbuild/bbs-3.22-books/R/site-library 0.9.6     4.5.1
ggstats                            /home/biocbuild/bbs-3.22-books/R/site-library 0.10.0    4.5.1
ggthemes                           /home/biocbuild/bbs-3.22-books/R/site-library 5.1.0     4.5.1
GlobalOptions                      /home/biocbuild/bbs-3.22-books/R/site-library 0.1.2     4.5.1
globals                            /home/biocbuild/bbs-3.22-books/R/site-library 0.18.0    4.5.1
glue                               /home/biocbuild/bbs-3.22-books/R/site-library 1.8.0     4.5.1
gmp                                /home/biocbuild/bbs-3.22-books/R/site-library 0.7-5     4.5.1
GO.db                              /home/biocbuild/bbs-3.22-books/R/site-library 3.21.0    4.5.1
GOTHiC                             /home/biocbuild/bbs-3.22-books/R/site-library 1.45.1    4.5.1
gplots                             /home/biocbuild/bbs-3.22-books/R/site-library 3.2.0     4.5.1
graph                              /home/biocbuild/bbs-3.22-books/R/site-library 1.87.0    4.5.1
graphlayouts                       /home/biocbuild/bbs-3.22-books/R/site-library 1.2.2     4.5.1
gridExtra                          /home/biocbuild/bbs-3.22-books/R/site-library 2.3       4.5.1
GSEABase                           /home/biocbuild/bbs-3.22-books/R/site-library 1.71.0    4.5.1
gtable                             /home/biocbuild/bbs-3.22-books/R/site-library 0.3.6     4.5.1
gtools                             /home/biocbuild/bbs-3.22-books/R/site-library 3.9.5     4.5.1
Gviz                               /home/biocbuild/bbs-3.22-books/R/site-library 1.53.1    4.5.1
gypsum                             /home/biocbuild/bbs-3.22-books/R/site-library 1.5.0     4.5.1
h5mread                            /home/biocbuild/bbs-3.22-books/R/site-library 1.1.1     4.5.1
HCAData                            /home/biocbuild/bbs-3.22-books/R/site-library 1.25.0    4.5.1
HDF5Array                          /home/biocbuild/bbs-3.22-books/R/site-library 1.37.0    4.5.1
here                               /home/biocbuild/bbs-3.22-books/R/site-library 1.0.1     4.5.1
HiCcompare                         /home/biocbuild/bbs-3.22-books/R/site-library 1.31.0    4.5.1
HiCExperiment                      /home/biocbuild/bbs-3.22-books/R/site-library 1.9.2     4.5.1
HiContacts                         /home/biocbuild/bbs-3.22-books/R/site-library 1.11.0    4.5.1
HiContactsData                     /home/biocbuild/bbs-3.22-books/R/site-library 1.11.0    4.5.1
HiCool                             /home/biocbuild/bbs-3.22-books/R/site-library 1.9.1     4.5.1
highr                              /home/biocbuild/bbs-3.22-books/R/site-library 0.11      4.5.1
Hmisc                              /home/biocbuild/bbs-3.22-books/R/site-library 5.2-3     4.5.1
hms                                /home/biocbuild/bbs-3.22-books/R/site-library 1.1.3     4.5.1
htmlTable                          /home/biocbuild/bbs-3.22-books/R/site-library 2.4.3     4.5.1
htmltools                          /home/biocbuild/bbs-3.22-books/R/site-library 0.5.8.1   4.5.1
htmlwidgets                        /home/biocbuild/bbs-3.22-books/R/site-library 1.6.4     4.5.1
httpuv                             /home/biocbuild/bbs-3.22-books/R/site-library 1.6.16    4.5.1
httr                               /home/biocbuild/bbs-3.22-books/R/site-library 1.4.7     4.5.1
httr2                              /home/biocbuild/bbs-3.22-books/R/site-library 1.2.1     4.5.1
hwriter                            /home/biocbuild/bbs-3.22-books/R/site-library 1.3.2.1   4.5.1
igraph                             /home/biocbuild/bbs-3.22-books/R/site-library 2.1.4     4.5.1
impute                             /home/biocbuild/bbs-3.22-books/R/site-library 1.83.0    4.5.1
InteractionSet                     /home/biocbuild/bbs-3.22-books/R/site-library 1.37.1    4.5.1
interp                             /home/biocbuild/bbs-3.22-books/R/site-library 1.1-6     4.5.1
IRanges                            /home/biocbuild/bbs-3.22-books/R/site-library 2.43.0    4.5.1
irlba                              /home/biocbuild/bbs-3.22-books/R/site-library 2.3.5.1   4.5.1
iSEE                               /home/biocbuild/bbs-3.22-books/R/site-library 2.21.1    4.5.1
isoband                            /home/biocbuild/bbs-3.22-books/R/site-library 0.2.7     4.5.1
iterators                          /home/biocbuild/bbs-3.22-books/R/site-library 1.0.14    4.5.1
jpeg                               /home/biocbuild/bbs-3.22-books/R/site-library 0.1-11    4.5.1
jquerylib                          /home/biocbuild/bbs-3.22-books/R/site-library 0.1.4     4.5.1
jsonlite                           /home/biocbuild/bbs-3.22-books/R/site-library 2.0.0     4.5.1
jsonvalidate                       /home/biocbuild/bbs-3.22-books/R/site-library 1.5.0     4.5.1
KEGGREST                           /home/biocbuild/bbs-3.22-books/R/site-library 1.49.1    4.5.1
kernlab                            /home/biocbuild/bbs-3.22-books/R/site-library 0.9-33    4.5.1
knitr                              /home/biocbuild/bbs-3.22-books/R/site-library 1.50      4.5.1
labeling                           /home/biocbuild/bbs-3.22-books/R/site-library 0.4.3     4.5.1
lambda.r                           /home/biocbuild/bbs-3.22-books/R/site-library 1.2.4     4.5.1
lars                               /home/biocbuild/bbs-3.22-books/R/site-library 1.3       4.5.1
later                              /home/biocbuild/bbs-3.22-books/R/site-library 1.4.2     4.5.1
latticeExtra                       /home/biocbuild/bbs-3.22-books/R/site-library 0.6-30    4.5.1
lazyeval                           /home/biocbuild/bbs-3.22-books/R/site-library 0.2.2     4.5.1
lifecycle                          /home/biocbuild/bbs-3.22-books/R/site-library 1.0.4     4.5.1
limma                              /home/biocbuild/bbs-3.22-books/R/site-library 3.65.3    4.5.1
listenv                            /home/biocbuild/bbs-3.22-books/R/site-library 0.9.1     4.5.1
listviewer                         /home/biocbuild/bbs-3.22-books/R/site-library 4.0.0     4.5.1
locfit                             /home/biocbuild/bbs-3.22-books/R/site-library 1.5-9.12  4.5.1
LoomExperiment                     /home/biocbuild/bbs-3.22-books/R/site-library 1.27.0    4.5.1
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splines                            /home/biocbuild/bbs-3.22-books/R/library      4.5.1     4.5.1
stats                              /home/biocbuild/bbs-3.22-books/R/library      4.5.1     4.5.1
stats4                             /home/biocbuild/bbs-3.22-books/R/library      4.5.1     4.5.1
survival                           /home/biocbuild/bbs-3.22-books/R/library      3.8-3     4.5.1
tcltk                              /home/biocbuild/bbs-3.22-books/R/library      4.5.1     4.5.1
tools                              /home/biocbuild/bbs-3.22-books/R/library      4.5.1     4.5.1
utils                              /home/biocbuild/bbs-3.22-books/R/library      4.5.1     4.5.1