Multiple platform build/check report for BioC 3.22 - BUILD results for igblastr on lconway

Hostname	OS	Arch (*)	R version	Installed pkgs
nebbiolo2	Linux (Ubuntu 24.04.3 LTS)	x86_64	4.5.1 Patched (2025-08-23 r88802) -- "Great Square Root"	4845
lconway	macOS 12.7.1 Monterey	x86_64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4632
kjohnson3	macOS 13.7.7 Ventura	arm64	4.5.1 Patched (2025-09-10 r88807) -- "Great Square Root"	4577
taishan	Linux (openEuler 24.03 LTS)	aarch64	4.5.0 (2025-04-11) -- "How About a Twenty-Six"	4576
Click on any hostname to see more info about the system (e.g. compilers) () as reported by 'uname -p', except on Windows and Mac OS X*

BUILD results for igblastr on lconway

To the developers/maintainers of the igblastr package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/igblastr.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: igblastr

Version: 0.99.18

Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data igblastr

StartedAt: 2025-10-02 17:25:30 -0400 (Thu, 02 Oct 2025)

EndedAt: 2025-10-02 17:30:58 -0400 (Thu, 02 Oct 2025)

EllapsedTime: 328.2 seconds

RetCode: 1

Status: ERROR

PackageFile: None

PackageFileSize: NA

Command output

##############################################################################
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### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data igblastr
###
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* checking for file ‘igblastr/DESCRIPTION’ ... OK
* preparing ‘igblastr’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘igblastr_overview.Rmd’ using rmarkdown

Quitting from igblastr_overview.Rmd:171-173 [unnamed-chunk-6]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error:
! error in evaluating the argument 'x' in selecting a method for function 'head': Gateway Timeout (HTTP 504).
---
Backtrace:
    ▆
 1. ├─utils::head(list_IMGT_releases())
 2. ├─igblastr::list_IMGT_releases()
 3. │ └─igblastr:::list_archived_IMGT_zips(recache = recache)
 4. │   └─igblastr:::.fetch_list_of_archived_IMGT_zips()
 5. │     └─igblastr:::scrape_html_dir_index(...)
 6. │       └─igblastr:::getUrlContent(...)
 7. │         └─httr::stop_for_status(response)
 8. │           └─base::stop(http_condition(x, "error", task = task, call = call))
 9. └─base (local) `<fn>`(`<http_504>`)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'igblastr_overview.Rmd' failed with diagnostics:
error in evaluating the argument 'x' in selecting a method for function 'head': Gateway Timeout (HTTP 504).
--- failed re-building ‘igblastr_overview.Rmd’

SUMMARY: processing the following file failed:
  ‘igblastr_overview.Rmd’

Error: Vignette re-building failed.
Execution halted