##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.23-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data spatialLIBD
###
##############################################################################
##############################################################################


* checking for file ‘spatialLIBD/DESCRIPTION’ ... OK
* preparing ‘spatialLIBD’:
* checking DESCRIPTION meta-information ... OK
* installing the package (it is needed to build vignettes)
* creating vignettes ... ERROR
--- re-building ‘TenX_data_download.Rmd’ using rmarkdown
--- finished re-building ‘TenX_data_download.Rmd’

--- re-building ‘guide_to_spatial_registration.Rmd’ using rmarkdown
--- finished re-building ‘guide_to_spatial_registration.Rmd’

--- re-building ‘multi_gene_plots.Rmd’ using rmarkdown

Quitting from multi_gene_plots.Rmd:121-138 [GFAP_boxplot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `readRDS()`:
! error reading from connection
---
Backtrace:
    ▆
 1. └─spatialLIBD::fetch_data(type = "modeling_results")
 2.   ├─AnnotationHub::query(eh, pattern = c(tag, hub_title))
 3.   └─AnnotationHub::query(eh, pattern = c(tag, hub_title))
 4.     └─AnnotationHub (local) .local(x, pattern, ...)
 5.       └─AnnotationHub:::.db_index_load(x)
 6.         └─base::readRDS(.db_index_file(x))
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~

Error: processing vignette 'multi_gene_plots.Rmd' failed with diagnostics:
error reading from connection
--- failed re-building ‘multi_gene_plots.Rmd’

--- re-building ‘spatialLIBD.Rmd’ using rmarkdown
--- finished re-building ‘spatialLIBD.Rmd’

SUMMARY: processing the following file failed:
  ‘multi_gene_plots.Rmd’

Error: Vignette re-building failed.
Execution halted