| FeatureSet-class {oligo} | R Documentation |
This is a class representation for oligonucleotide arrays at probe level. The main component are the intensities from multiple arrays of
the same design file. It is an extension of the eSet-class.
Objects can be created by calls of the form new("FeatureSet", ...).
manufacturer:"character"
describing the manufacturer.platform:"character"
describing the design file associated to the object.assayData:"listOrEnv" as
described in eSet-class.sampleNames:"character" with
the sample names.reporterNames:"character" with
the reporter names.description:"MIAME"notes:"character" with notes.annotation:"character" with annotation.history:"character" with history.reporterInfo:"data.frameOrNULL"phenoData:"phenoData"
Class "eSet", directly.
Class "annotatedDataset", by class "eSet".
signature(object = "FeatureSet"): extracts
allele information for SNP arrays.signature(x = "FeatureSet"): produces boxplots.signature(object = "FeatureSet"): Returns
the indexes of features on the array.signature(object = "FeatureSet"): Returns
the names of the (PM) features.signature(object = "FeatureSet"):
Returns the Platform Design Environment associated to the object.signature(x = "FeatureSet"): Produces histograms.signature(x = "FeatureSet"): Produces image plots.signature(object = "FeatureSet"):
Returns the indexes in the PDEnv for given features.signature(x = "FeatureSet"): Returns the number
of samples in the object.signature(object = "FeatureSet"): Returns the
indexes for the MM features.signature(object = "FeatureSet"): Assigns a value
to the MM matrix.signature(object = "FeatureSet"): Returns the MM matrix.signature(x = "FeatureSet"): Returns the number
of columns of the array.signature(object = "FeatureSet"): Returns the
matrix with the number of pixels used.signature(x = "FeatureSet"): Returns the number
of rows of the array.signature(object = "FeatureSet"):
Returns the name of the PDEnv associated.signature(object = "FeatureSet"): Returns the
type of the array.signature(object = "FeatureSet"): Assigns a
type for the array.signature(object = "FeatureSet"): Returns the
indexes for the PM features.signature(object = "FeatureSet"): Assigns a value
to the PM matrix.signature(object = "FeatureSet"): Returns the PM matrix.signature(object = "FeatureSet"): Returns
the names of the features.signature(x = "FeatureSet"): returns the matrix of
standard deviations.signature(object = "FeatureSet"): Display basic
information about the array.signature(object = "FeatureSet"): returns
the array manufacturer.signature(object = "FeatureSet"): assigns
the array manufacturer.signature(object = "FeatureSet"): returns
the matrix of intensities.
eSet-class