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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("siggenes")
In most cases, you don't need to download the package archive at all.
siggenes
|
This package is for version 2.13 of Bioconductor; for the stable, up-to-date release version, see siggenes.
Multiple testing using SAM and Efron's empirical Bayes approaches
Bioconductor version: 2.13
Identification of differentially expressed genes and estimation of the False Discovery Rate (FDR) using both the Significance Analysis of Microarrays (SAM) and the Empirical Bayes Analyses of Microarrays (EBAM).
Author: Holger Schwender
Maintainer: Holger Schwender <holger.schw at gmx.de>
Citation (from within R,
enter citation("siggenes")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("siggenes")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("siggenes")
| R Script | siggenes Manual | |
| siggenesRnews.pdf | ||
| HTML | R: EBAM specific plot method | |
| HTML | R: EBAM specific print method | |
| HTML | R: EBAM specific summary method | |
| HTML | R: FindA0 specific plot method | |
| HTML | R: FindA0 specific print method | |
| HTML | R: SAM specific identify method | |
| HTML | R: SAM specific plot method | |
| HTML | R: SAM specific print method | |
| HTML | R: SAM specific summary method | |
| Reference Manual |
Details
| biocViews | DifferentialExpression, ExonArray, GeneExpression, Microarray, MultipleComparisons, SNP, Software |
| Version | 1.36.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 11 years) |
| License | LGPL (>= 2) |
| Depends | methods, Biobase, multtest, splines, graphics |
| Imports | stats4 |
| LinkingTo | |
| Suggests | affy, annotate, genefilter, KernSmooth, scrime (>= 1.2.5) |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | KCsmart, oneChannelGUI |
| Imports Me | charm, DeSousa2013, GeneSelector, minfi |
| Suggests Me | GeneSelector, logicFS, trio, XDE |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | siggenes_1.36.0.tar.gz |
| Windows Binary | siggenes_1.36.0.zip |
| Mac OS X 10.6 (Snow Leopard) | siggenes_1.36.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/siggenes/tree/release-2.13 |
| Package Short Url | http://bioconductor.org/packages/siggenes/ |
| Package Downloads Report | Download Stats |
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