affxparser

Affymetrix File Parsing SDK

Package for parsing Affymetrix files (CDF, CEL, CHP, BPMAP, BAR). It provides methods for fast and memory efficient parsing of Affymetrix files using the Affymetrix' Fusion SDK. Both ASCII- and binary-based files are supported. Currently, there are methods for reading chip definition file (CDF) and a cell intensity file (CEL). These files can be read either in full or in part. For example, probe signals from a few probesets can be extracted very quickly from a set of CEL files into a convenient list structure.

Author	Henrik Bengtsson, James Bullard, Kasper Daniel Hansen
Maintainer	Kasper Daniel Hansen

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affxparser")

Documentation

Package Downloads

No vignettes available

Reference Manual

Package source	affxparser_1.14.2.tar.gz
Windows binary	affxparser_1.14.2.zip
MacOS X 10.4 (Tiger) binary	affxparser_1.14.2.tgz
MacOS X 10.5 (Leopard) binary	affxparser_1.14.2.tgz
Package Downloads Report	Downloads Stats

Details

biocViews	Infrastructure , DataImport
Depends	R
Imports
Suggests	R.utils , AffymetrixDataTestFiles
System Requirements
License	LGPL-2
URL
Depends On Me	ITALICS , oligo , pdInfoBuilder
Imports Me
Suggests Me
Development History	Bioconductor Changelog