affy

Methods for Affymetrix Oligonucleotide Arrays

The package contains functions for exploratory oligonucleotide array analysis. The dependance to tkWidgets only concerns few convenience functions. 'affy' is fully functional without it.

Author Rafael A. Irizarry , Laurent Gautier , Benjamin Milo Bolstad , and Crispin Miller with contributions from Magnus Astrand , Leslie M. Cope , Robert Gentleman, Jeff Gentry, Conrad Halling , Wolfgang Huber, James MacDonald , Benjamin I. P. Rubinstein, Christopher Workman , John Zhang
Maintainer Rafael A. Irizarry

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("affy")

Documentation

Package Downloads
1. Primer
2. Built-in Processing Methods
3. Custom Processing Methods
4. Import Methods
Reference Manual
Package source affy_1.20.2.tar.gz
Windows binary affy_1.20.2.zip
MacOS X 10.4 (Tiger) binary affy_1.20.2.tgz
MacOS X 10.5 (Leopard) binary affy_1.20.2.tgz
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Details

biocViews
Microarray , OneChannel , Preprocessing
Depends
R , Biobase
Imports
Biobase , graphics , methods , stats , utils , affyio , preprocessCore
Suggests
tkWidgets , geneplotter , affydata
System Requirements
License LGPL (>= 2.0)
URL
Depends On Me
AffyExpress , ArrayExpress , ArrayTools , GeneTraffic , Harshlight , RefPlus , adSplit , affyContam , affyPLM , affyPara , affyQCReport , affycoretools , affylmGUI , affypdnn , altcdfenvs , arrayMvout , bgx , dualKS , ecolitk , exonmap , factDesign , gcrma , logitT , lumi , maDB , makecdfenv , matchprobes , panp , plier , plw , puma , rHVDM , simpleaffy , sscore , tilingArray , vsn , webbioc
Imports Me
Suggests Me
BiocCaseStudies , BufferedMatrixMethods , beadarraySNP , beadarray , hexbin , limma , made4 , oneChannelGUI , siggenes
Development History Bioconductor Changelog