topGO

topGO: Enrichment analysis for Gene Ontology

topGO package provides tools for testing GO terms while accounting for the topology of the GO graph. Different test statistics and different methods for eliminating local similarities and dependencies between GO terms can be implemented and applied.

Author	Adrian Alexa, Jorg Rahnenfuhrer
Maintainer	Adrian Alexa

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("topGO")

Documentation

Package Downloads

doc

Reference Manual

Package source	topGO_1.10.1.tar.gz
Windows binary	topGO_1.10.1.zip
MacOS X 10.4 (Tiger) binary	topGO_1.10.1.tgz
MacOS X 10.5 (Leopard) binary	topGO_1.10.1.tgz
Package Downloads Report	Downloads Stats

Details

biocViews	Microarray , Statistics , Visualization
Depends	R , methods , graph , Biobase , GO.db , AnnotationDbi , SparseM
Imports	methods , graph , Biobase , SparseM , AnnotationDbi
Suggests	ALL , hgu95av2.db , genefilter , xtable , multtest , Rgraphviz , hgu133a.db
System Requirements
License	LGPL
URL
Depends On Me	RNAither
Imports Me
Suggests Me
Development History	Bioconductor Changelog