Bioconductor version: 2.6
q-order partial correlation graphs, or qp-graphs for short, are undirected Gaussian graphical Markov models built from q-order partial correlations. They are useful for learning undirected graphical Gaussian Markov models from data sets where the number of random variables p exceeds the available sample size n as, for instance, in the case of microarray data where they can be employed to reverse engineer a molecular regulatory network.
Author: R. Castelo and A. Roverato
Maintainer: Robert Castelo <robert.castelo at upf.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R") biocLite("qpgraph")
To cite this package in a publication, start R and enter:
citation("qpgraph")
qpPCCdistbyTF.pdf | ||
qpPreRecComparison.pdf | ||
qpPreRecComparisonFullRecall.pdf | ||
qpTRnet50pctpre.pdf | ||
R Script | Reverse-engineer transcriptional regulatory networks using qpgraph | |
Reference Manual |
biocViews | Microarray, GeneExpression, Transcription, Pathways, Bioinformatics, GraphsAndNetworks |
Depends | methods, Biobase(>= 2.5.5), AnnotationDbi |
Imports | methods, Biobase(>= 2.5.5), AnnotationDbi |
Suggests | mvtnorm, graph, Rgraphviz, annotate, genefilter, Category(>= 2.9.7), org.EcK12.eg.db(>= 2.2.6), GOstats |
System Requirements | |
License | GPL (>= 2) |
URL | http://functionalgenomics.upf.edu/qpgraph |
Depends On Me | |
Imports Me | |
Suggests Me | |
Version | 1.4.1 |
Since | Bioconductor 2.4 (R-2.9) |
Package Source | qpgraph_1.4.1.tar.gz |
Windows Binary | qpgraph_1.4.1.zip (32- & 64-bit) |
MacOS 10.5 (Leopard) binary | qpgraph_1.4.1.tgz |
Package Downloads Report | Download Stats |
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