AffyExpress

Affymetrix Quality Assessment and Analysis Tool

Bioconductor version: 2.7

The purpose of this package is to provide a comprehensive and easy-to-use tool for quality assessment and to identify differentially expressed genes in the Affymetrix gene expression data.

Author: Xiwei Wu <xwu at coh.org>, Xuejun Arthur Li <xueli at coh.org>

Maintainer: Xuejun Arthur Li <xueli at coh.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("AffyExpress")

To cite this package in a publication, start R and enter:

    citation("AffyExpress")

Documentation

PDF	R Script	1. Primer
PDF		Reference Manual

Details

biocViews	Microarray, OneChannel, QualityControl, Preprocessing, Bioinformatics, DifferentialExpression, Annotation, ReportWriting, Visualization
Depends	R (>= 2.5.0), affy(>= 1.23.4), limma
Imports
Suggests	simpleaffy, R2HTML, affyPLM, hgu95av2cdf, hgu95av2, test3cdf, genefilter, estrogen, annaffy, gcrma
System Requirements
License	LGPL
URL
Depends On Me
Imports Me
Suggests Me
Version	1.16.0
Since	Bioconductor 2.1 (R-2.6)

Package Downloads

Package Source	AffyExpress_1.16.0.tar.gz
Windows Binary	AffyExpress_1.16.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	AffyExpress_1.16.0.tgz
Package Downloads Report	Download Stats

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