\name{plotCC} \alias{plotCC} \title{Generate the Correlation Circle.} \description{ This method generates the correlation circle. Correlation circle is used to assess the coherence of a model. Indeed, Each vector represents our conditions and the angle between each vector give the correlation between the variables. if the angle is higher than 90 degrees there is no correlation. } \usage{ plotCC(object) } \arguments{ \item{object}{ Object of the Class \code{SquadSimResServiceImpl}. } } \details{ The percentage of variability explained by the two first principal components are displayed in parenthesis in the axis label. } \author{ Martial Sankar } \seealso{ More specific information in \code{\link{plotCC-methods}}. For more informations about the input object see \code{\link{SquadSimResServiceImpl-class}}. } \examples{ fpath <- system.file("extdata", package="SQUADD") fileModel <- file.path(fpath,"data_IAA") nm <- c("ARF(a)", "ARF(i)", "AR_Genes", "Aux/IAA", "BES1/BZR1", "BIN2", "BR", "BRI1-BAK1","BRR_Genes","BRX","BR_Biosynthesis","BZR1", "DO", "IAA", "IAA_Biosynthesis", "NGA1", "PIN", "SCFTir1", "StimAux", "StimBR") t <- 50 ## call constructor obj <- simResService( folder=fileModel, time=t, ncolor=5, legend=nm, indexDeno=1, method="lowess", conditionList=c("Normal", "brxlof", "BRrescue","brxarfilof", "brxarfiBRrescue", "brxgof") ) ## call method plotCC(obj) } \keyword{correlation} \keyword{PCA} \keyword{circle}