\name{mergeProfilesLists}
\alias{mergeProfilesLists}
\title{Combines two lists of profiles into one}
\description{
Combines two lists of profiles, that is two lists with three components, 
'MF', 'BP', 'CC' into a single one.
}
\usage{
mergeProfilesLists(profilesList1, profilesList2, emptyCats = F, profNames = NULL)
}
%- maybe also 'usage' for other objects documented here.
\arguments{
  \item{profilesList1}{First list to combine}
  \item{profilesList2}{Second list to combine}
  \item{emptyCats}{Boolean. Set to TRUE if there are empty categories that should be accounted for
  in any of the profiles}
  \item{profNames}{Names for the profiles (optional). If missing they are set to
  'Frequency-1', 'Frequency-2',etc.}
}
\value{
A list of profiles with more than one column each.
}
\author{Alex Sanchez}
\examples{
require(goProfiles)
data(prostateIds)
welsh.MF <- basicProfile (welsh01EntrezIDs[1:100], onto="MF", level=2, orgPackage="org.Hs.eg.db") 
singh.MF <- basicProfile (singh01EntrezIDs[1:100], onto="MF", level=2, orgPackage="org.Hs.eg.db") 
plotProfiles(welsh.MF,'Functional profiles for Welsh dataset',percentage=TRUE)
welsh.singh.MF <-mergeProfilesLists(welsh.MF, singh.MF, profNames=c("Welsh", "Singh"))
}
\keyword{utilities}