\name{searchTermPrefix} \alias{searchTermPrefix} \title{Searches for term by prefix in ontology} \description{ Searches the term by prefix in the ontology. Returns list of term's accessions. } \usage{ searchTermPrefix(object,prefix) } \arguments{ \item{object}{instance of the \code{\linkS4class{OntologyParser}} class} \item{prefix}{prefix to search for} } \value{ Returns list of accessions } \references{ Adamusiak T, Burdett T, van der Velde K J, Abeygunawardena N, Antonakaki D, Parkinson H and Swertz M: OntoCAT -- a simpler way to access ontology resources. \emph{Available from Nature Precedings} \url{http://dx.doi.org/10.1038/npre.2010.4666.1} (2010) Malone J, Holloway E, Adamusiak T, Kapushesky M, Zheng J, Kolesnikov N, Zhukova A, Brazma A, Parkinson H: Modeling Sample Variables with an Experimental Factor Ontology. \emph{Bioinformatics} 2010, \bold{26}(8):1112--1118 Experimental Factor Ontology \url{http://www.ebi.ac.uk/efo} Ontology Common API Tasks java library \url{http://www.ontocat.org} Java sources and javadocs: \url{http://sourceforge.net/projects/ontocat/files/} } \author{Misha Kapushesky, Pavel Kurnosov, Natalja Kurbatova} \seealso{\code{\linkS4class{OntologyParser}} and \code{\linkS4class{OntologyTerm}}} \examples{ efo <- getEFOParser() searchTermPrefix(efo,"thy") }