HCAExplorer
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.13 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see HCAExplorer.
Browse the Human Cell Atlas data portal
Bioconductor version: 3.13
Search, browse, reference, and download resources from the Human Cell Atlas data portal. Development of this package is supported through funds from the Chan / Zuckerberg initiative.
Author: Daniel Van Twisk <Daniel.VanTwisk at RoswellPark.org>, Martin Morgan <Martin.Morgan at RoswellPark.org>, Bioconductor Package Maintainer <maintainer at bioconductor.org>
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
citation("HCAExplorer")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("HCAExplorer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | DataImport, Sequencing, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.6.0), dplyr |
| Imports | BiocFileCache, HCAMatrixBrowser, S4Vectors, LoomExperiment, vctrs, curl, httr, jsonlite, methods, plyr, readr, rlang, tibble, tidygraph, utils, xml2 |
| System Requirements | |
| URL | https://github.com/Bioconductor/HCABrowser |
| Bug Reports | https://github.com/Bioconductor/HCABrowser/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HCAExplorer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HCAExplorer |
| Package Short Url | https://bioconductor.org/packages/HCAExplorer/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |