qPLEXanalyzer
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see qPLEXanalyzer.
Tools for qPLEX-RIME data analysis
Bioconductor version: 3.13
Tools for quantitative proteomics data analysis generated from qPLEX-RIME method.
Author: Matthew Eldridge [aut], Kamal Kishore [aut], Ashley Sawle [aut, cre]
Maintainer: Ashley Sawle <ads2202cu at gmail.com>
Citation (from within R, enter
citation("qPLEXanalyzer")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("qPLEXanalyzer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("qPLEXanalyzer")| qPLEXanalyzer | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, ImmunoOncology, MassSpectrometry, Normalization, Preprocessing, Proteomics, QualityControl, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL-2 |
| Depends | R (>= 4.0), Biobase, MSnbase |
| Imports | assertthat, BiocGenerics, Biostrings, dplyr (>= 1.0.0), ggdendro, ggplot2, graphics, grDevices, IRanges, limma, magrittr, preprocessCore, purrr, RColorBrewer, readr, rlang, scales, stats, stringr, tibble, tidyr, tidyselect, utils |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/crukci-bioinformatics/qPLEXanalyzer/issues |
See More
| Suggests | gridExtra, knitr, qPLEXdata, rmarkdown, testthat, UniProt.ws, vdiffr |
| Linking To | |
| Enhances | |
| Depends On Me | qPLEXdata |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | qPLEXanalyzer_1.10.0.tar.gz |
| Windows Binary | qPLEXanalyzer_1.10.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | qPLEXanalyzer_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/qPLEXanalyzer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/qPLEXanalyzer |
| Bioc Package Browser | https://code.bioconductor.org/browse/qPLEXanalyzer/ |
| Package Short Url | https://bioconductor.org/packages/qPLEXanalyzer/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.13 | Source Archive |