BloodCancerMultiOmics2017
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see BloodCancerMultiOmics2017.
"Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al. - experimental data and complete analysis
Bioconductor version: 3.13
The package contains data of the Primary Blood Cancer Encyclopedia (PACE) project together with a complete executable transcript of the statistical analysis and reproduces figures presented in the paper "Drug-perturbation-based stratification of blood cancer" by Dietrich S, Oles M, Lu J et al., J. Clin. Invest. (2018) 128(1):427-445. doi:10.1172/JCI93801.
Author: Malgorzata Oles, Sascha Dietrich, Junyan Lu, Britta Velten, Andreas Mock, Vladislav Kim, Wolfgang Huber
Maintainer: Malgorzata Oles <dr.malgorzata.oles at gmail.com>
citation("BloodCancerMultiOmics2017")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BloodCancerMultiOmics2017")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BloodCancerMultiOmics2017")| BloodCancerMultiOmics2017 | HTML | R Script |
| BloodCancerMultiOmics2017 - data overview | HTML | R Script |
| Reference Manual |
Details
| biocViews | CancerData, ExperimentData, LeukemiaCancerData, ReproducibleResearch |
| Version | 1.12.0 |
| License | LGPL (>= 3) |
| Depends | R (>= 3.5.0) |
| Imports | beeswarm, Biobase, DESeq2, devtools, dplyr, ggdendro, ggplot2, glmnet, graphics, grDevices, grid, gtable, ipflasso, methods, RColorBrewer, reshape2, scales, stats, SummarizedExperiment, survival, tibble |
| System Requirements | |
| URL |
See More
| Suggests | BiocStyle, knitr, rmarkdown, abind, AnnotationDbi, biomaRt, broom, colorspace, cowplot, dendsort, doParallel, foreach, forestplot, genefilter, ggbeeswarm, ggtern, gridExtra, hexbin, IHW, limma, magrittr, Matrix, maxstat, nat, org.Hs.eg.db, pheatmap, piano, readxl, Rtsne, tidyr, xtable |
| Linking To | |
| Enhances | |
| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BloodCancerMultiOmics2017_1.12.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/BloodCancerMultiOmics2017 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BloodCancerMultiOmics2017 |
| Package Short Url | https://bioconductor.org/packages/BloodCancerMultiOmics2017/ |
| Package Downloads Report | Download Stats |