DeSousa2013
This package is for version 3.13 of Bioconductor; for the stable, up-to-date release version, see DeSousa2013.
Poor prognosis colon cancer is defined by a molecularly distinct subtype and precursor lesion
Bioconductor version: 3.13
This package reproduces the main pipeline to analyze the AMC-AJCCII-90 microarray data set in De Sousa et al. accepted by Nature Medicine in 2013.
Author: Xin Wang <Xin.Wang at cruk.cam.ac.uk>
Maintainer: Xin Wang <Xin.Wang at cruk.cam.ac.uk>
Citation (from within R, enter
citation("DeSousa2013")):
Installation
To install this package, start R (version "4.1") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DeSousa2013")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DeSousa2013")| Main vignette:Poor prognosis colon cancer is defined by a molecular distinct subtype and develops from serrated precursor lesions | R Script | |
| Reference Manual |
Details
| biocViews | CancerData, ColonCancerData, ExperimentData, MicroarrayData |
| Version | 1.28.0 |
| License | Artistic-2.0 |
| Depends | R (>= 2.15) |
| Imports | affy, frma, frmaTools, hgu133plus2.db, hgu133plus2frmavecs, sva, rgl, ConsensusClusterPlus, cluster, siggenes, ROCR, pamr, survival, gplots, AnnotationDbi, Biobase |
| System Requirements | |
| URL |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DeSousa2013_1.28.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/DeSousa2013 |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DeSousa2013 |
| Package Short Url | https://bioconductor.org/packages/DeSousa2013/ |
| Package Downloads Report | Download Stats |