altcdfenvs
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see altcdfenvs.
alternative CDF environments (aka probeset mappings)
Bioconductor version: 3.16
Convenience data structures and functions to handle cdfenvs
Author: Laurent Gautier <lgautier at gmail.com>
Maintainer: Laurent Gautier <lgautier at gmail.com>
Citation (from within R, enter
citation("altcdfenvs")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("altcdfenvs")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("altcdfenvs")| altcdfenvs | R Script | |
| Alternative CDF environments for 2(or more)-genomes chips | R Script | |
| Modifying existing CDF environments to make alternative CDF environments | R Script | |
| Reference Manual |
Details
| biocViews | Annotation, Microarray, OneChannel, Preprocessing, ProprietaryPlatforms, QualityControl, Software, Transcription |
| Version | 2.60.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 19 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.7), methods, BiocGenerics(>= 0.1.0), S4Vectors(>= 0.9.25), Biobase(>= 2.15.1), affy, makecdfenv, Biostrings, hypergraph |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | plasmodiumanophelescdf, hgu95acdf, hgu133aprobe, hgu133a.db, hgu133acdf, Rgraphviz, RColorBrewer |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | Harshlight |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | altcdfenvs_2.60.0.tar.gz |
| Windows Binary | altcdfenvs_2.60.0.zip |
| macOS Binary (x86_64) | altcdfenvs_2.60.0.tgz |
| macOS Binary (arm64) | altcdfenvs_2.60.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/altcdfenvs |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/altcdfenvs |
| Bioc Package Browser | https://code.bioconductor.org/browse/altcdfenvs/ |
| Package Short Url | https://bioconductor.org/packages/altcdfenvs/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |