BSgenome.Mmusculus.UCSC.mm10
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see BSgenome.Mmusculus.UCSC.mm10.
Full genome sequences for Mus musculus (UCSC version mm10, based on GRCm38.p6)
Bioconductor version: 3.16
Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm10, based on GRCm38.p6) and stored in Biostrings objects.
Author: The Bioconductor Dev Team
Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>
Citation (from within R, enter
citation("BSgenome.Mmusculus.UCSC.mm10")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("BSgenome.Mmusculus.UCSC.mm10")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, BSgenome, Genetics, Mus_musculus |
| Version | 1.4.3 |
| License | Artistic-2.0 |
| Depends | R (>= 3.5.0), BSgenome(>= 1.60.0) |
| Imports | BSgenome |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | BSgenome.Mmusculus.UCSC.mm10.masked |
| Imports Me | ATACCoGAPS, BSgenome.Mmusculus.UCSC.mm10.masked, GeneStructureTools, musicatk, trena |
| Suggests Me | AneuFinder, BSgenome, circRNAprofiler, crisprDesign, CRISPRseek, enhancerHomologSearch, EpiCompare, factR, gcapc, GenomicRanges, GRaNIE, HiCDCPlus, InPAS, m6Aboost, MiRaGE, monaLisa, Motif2Site, multicrispr, NADfinder, periodicDNA, scanMiRApp, scmeth, SCOPE, SingleMoleculeFootprinting |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BSgenome.Mmusculus.UCSC.mm10_1.4.3.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Package Short Url | https://bioconductor.org/packages/BSgenome.Mmusculus.UCSC.mm10/ |
| Package Downloads Report | Download Stats |