DelayedDataFrame
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see DelayedDataFrame.
Delayed operation on DataFrame using standard DataFrame metaphor
Bioconductor version: 3.19
Based on the standard DataFrame metaphor, we are trying to implement the feature of delayed operation on the DelayedDataFrame, with a slot of lazyIndex, which saves the mapping indexes for each column of DelayedDataFrame. Methods like show, validity check, [/[[ subsetting, rbind/cbind are implemented for DelayedDataFrame to be operated around lazyIndex. The listData slot stays untouched until a realization call e.g., DataFrame constructor OR as.list() is invoked.
Author: Qian Liu [aut, cre], Hervé Pagès [aut], Martin Morgan [aut]
Maintainer: Qian Liu <Qian.Liu at roswellpark.org>
citation("DelayedDataFrame")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DelayedDataFrame")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DelayedDataFrame")| DelayedDataFrame | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataRepresentation, Infrastructure, Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 3.9 (R-3.6) (5.5 years) |
| License | GPL-3 |
| Depends | R (>= 3.6), S4Vectors(>= 0.23.19), DelayedArray(>= 0.7.5) |
| Imports | methods, stats, BiocGenerics |
| System Requirements | |
| URL | https://github.com/Bioconductor/DelayedDataFrame |
| Bug Reports | https://github.com/Bioconductor/DelayedDataFrame/issues |
See More
| Suggests | testthat, knitr, rmarkdown, BiocStyle, SeqArray, GDSArray |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | VariantExperiment |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DelayedDataFrame_1.20.0.tar.gz |
| Windows Binary (x86_64) | DelayedDataFrame_1.20.0.zip |
| macOS Binary (x86_64) | DelayedDataFrame_1.20.0.tgz |
| macOS Binary (arm64) | DelayedDataFrame_1.20.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DelayedDataFrame |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DelayedDataFrame |
| Bioc Package Browser | https://code.bioconductor.org/browse/DelayedDataFrame/ |
| Package Short Url | https://bioconductor.org/packages/DelayedDataFrame/ |
| Package Downloads Report | Download Stats |