ENmix
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see ENmix.
Quality control and analysis tools for Illumina DNA methylation BeadChip
Bioconductor version: 3.19
Tools for quanlity control, analysis and visulization of Illumina DNA methylation array data.
Author: Zongli Xu [cre, aut], Liang Niu [aut], Jack Taylor [ctb]
Maintainer: Zongli Xu <xuz at niehs.nih.gov>
Citation (from within R, enter
citation("ENmix")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ENmix")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ENmix")| ENmix User's Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BatchEffect, DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylationArray, Microarray, MultiChannel, Normalization, OneChannel, Preprocessing, PrincipalComponent, QualityControl, Regression, Software, TwoChannel |
| Version | 1.40.2 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9.5 years) |
| License | Artistic-2.0 |
| Depends | parallel, doParallel, foreach, SummarizedExperiment, stats, R (>= 3.5.0) |
| Imports | grDevices, graphics, matrixStats, methods, utils, irlba, geneplotter, impute, minfi, RPMM, illuminaio, dynamicTreeCut, IRanges, gtools, Biobase, ExperimentHub, AnnotationHub, genefilter, gplots, quadprog, S4Vectors |
| System Requirements | |
| URL | https://github.com/Bioconductor/ENmix |
| Bug Reports | https://github.com/Bioconductor/ENmix/issues |
See More
| Suggests | minfiData, RUnit, BiocGenerics, BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ENmix_1.40.2.tar.gz |
| Windows Binary (x86_64) | ENmix_1.40.2.zip |
| macOS Binary (x86_64) | ENmix_1.40.2.tgz |
| macOS Binary (arm64) | ENmix_1.40.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ENmix |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ENmix |
| Bioc Package Browser | https://code.bioconductor.org/browse/ENmix/ |
| Package Short Url | https://bioconductor.org/packages/ENmix/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.19 | Source Archive |