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QuartPAC

This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see QuartPAC.

Identification of mutational clusters in protein quaternary structures


Bioconductor version: 3.19

Identifies clustering of somatic mutations in proteins over the entire quaternary structure.

Author: Gregory Ryslik, Yuwei Cheng, Hongyu Zhao

Maintainer: Gregory Ryslik <gregory.ryslik at yale.edu>

Citation (from within R, enter citation("QuartPAC")):

Installation

To install this package, start R (version "4.4") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("QuartPAC")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("QuartPAC")
SpacePAC: Identifying mutational clusters in 3D protein space using simulation PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Clustering, Proteomics, Software, SomaticMutation
Version 1.36.0
In Bioconductor since BioC 3.1 (R-3.2) (9.5 years)
License GPL-2
Depends iPAC, GraphPAC, SpacePAC, data.table
Imports Biostrings, pwalign
System Requirements
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Suggests RUnit, BiocGenerics, rgl
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package QuartPAC_1.36.0.tar.gz
Windows Binary (x86_64) QuartPAC_1.36.0.zip
macOS Binary (x86_64) QuartPAC_1.36.0.tgz
macOS Binary (arm64)
Source Repository git clone https://git.bioconductor.org/packages/QuartPAC
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/QuartPAC
Bioc Package Browser https://code.bioconductor.org/browse/QuartPAC/
Package Short Url https://bioconductor.org/packages/QuartPAC/
Package Downloads Report Download Stats