SQLDataFrame
Representation of SQL tables in DataFrame metaphor
Bioconductor version: Release (3.19)
Implements bindings for SQL tables that are compatible with Bioconductor S4 data structures, namely the DataFrame and DelayedArray. This allows SQL-derived data to be easily used inside other Bioconductor objects (e.g., SummarizedExperiments) while keeping everything on disk.
Author: Qian Liu [aut, cre] , Aaron Lun [aut], Martin Morgan [aut]
Maintainer: Qian Liu <Qian.Liu at RoswellPark.org>
citation("SQLDataFrame")
):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SQLDataFrame")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SQLDataFrame")
User guide | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | DataRepresentation, Infrastructure, Software |
Version | 1.18.0 |
In Bioconductor since | BioC 3.10 (R-3.6) (5 years) |
License | LGPL (>= 3); File LICENSE |
Depends | DelayedArray, S4Vectors |
Imports | stats, utils, methods, BiocGenerics, RSQLite, duckdb, DBI |
System Requirements | |
URL | https://github.com/Bioconductor/SQLDataFrame |
Bug Reports | https://github.com/Bioconductor/SQLDataFrame/issues |
See More
Suggests | knitr, rmarkdown, BiocStyle, testthat |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | SQLDataFrame_1.18.0.tar.gz |
Windows Binary | SQLDataFrame_1.18.0.zip (64-bit only) |
macOS Binary (x86_64) | SQLDataFrame_1.18.0.tgz |
macOS Binary (arm64) | SQLDataFrame_1.18.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/SQLDataFrame |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SQLDataFrame |
Bioc Package Browser | https://code.bioconductor.org/browse/SQLDataFrame/ |
Package Short Url | https://bioconductor.org/packages/SQLDataFrame/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.19 | Source Archive |