iSEEhub
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see iSEEhub.
iSEE for the Bioconductor ExperimentHub
Bioconductor version: 3.19
This package defines a custom landing page for an iSEE app interfacing with the Bioconductor ExperimentHub. The landing page allows users to browse the ExperimentHub, select a data set, download and cache it, and import it directly into a Bioconductor iSEE app.
Author: Kevin Rue-Albrecht [aut, cre] 
Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>
citation("iSEEhub")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iSEEhub")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSEEhub")| Contributing to iSEEhub | HTML | R Script |
| Introduction to iSEEhub | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DataImport, ImmunoOncology Infrastructure, ShinyApps, SingleCell, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.16 (R-4.2) (2 years) |
| License | Artistic-2.0 |
| Depends | SummarizedExperiment, SingleCellExperiment, ExperimentHub |
| Imports | AnnotationHub, BiocManager, DT, iSEE, methods, rintrojs, S4Vectors, shiny, shinydashboard, shinyjs, utils |
| System Requirements | |
| URL | https://github.com/iSEE/iSEEhub |
| Bug Reports | https://support.bioconductor.org/t/iSEEhub |
See More
| Suggests | BiocStyle, covr, knitr, RefManageR, rmarkdown, sessioninfo, testthat (>= 3.0.0), nullrangesData |
| Linking To | |
| Enhances | BioPlex, biscuiteerData, bodymapRat, CLLmethylation, CopyNeutralIMA, curatedAdipoArray, curatedAdipoChIP, curatedMetagenomicData, curatedTCGAData, DMRcatedata, DuoClustering2018, easierData, emtdata, epimutacionsData, FieldEffectCrc, GenomicDistributionsData, GSE103322, GSE13015, GSE62944, HDCytoData, HMP16SData, HumanAffyData, imcdatasets, mcsurvdata, MetaGxBreast, MetaGxOvarian, MetaGxPancreas, MethylSeqData, muscData, NxtIRFdata, ObMiTi, quantiseqr, restfulSEData, RLHub, sesameData, SimBenchData, SingleCellMultiModal, SingleMoleculeFootprintingData, spatialDmelxsim, STexampleData, TabulaMurisData, TabulaMurisSenisData, TENxVisiumData, tissueTreg, VectraPolarisData, xcoredata |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | iSEEhub_1.6.0.tar.gz |
| Windows Binary (x86_64) | iSEEhub_1.6.0.zip (64-bit only) |
| macOS Binary (x86_64) | iSEEhub_1.6.0.tgz |
| macOS Binary (arm64) | iSEEhub_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iSEEhub |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iSEEhub |
| Bioc Package Browser | https://code.bioconductor.org/browse/iSEEhub/ |
| Package Short Url | https://bioconductor.org/packages/iSEEhub/ |
| Package Downloads Report | Download Stats |