scaeData
This package is for version 3.19 of Bioconductor; for the stable, up-to-date release version, see scaeData.
Data Package for SingleCellAlleleExperiment
Bioconductor version: 3.19
Contains default datasets used by the Bioconductor package SingleCellAlleleExperiment. The raw FASTQ files were sourced from publicly accessible datasets provided by 10x Genomics. Subsequently, our scIGD snakemake workflow was employed to process these FASTQ files. The resulting output from scIGD constitutes to the contents of this data package.
Author: Ahmad Al Ajami [aut, cre] 
, Jonas Schuck [aut] , Federico Marini [aut] , Katharina Imkeller [aut]
Maintainer: Ahmad Al Ajami <alajami at med.uni-frankfurt.de>
citation("scaeData")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("scaeData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scaeData")| scaeData User Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | ExperimentData, ExperimentHub, Homo_sapiens_Data, SingleCellData |
| Version | 1.0.0 |
| License | MIT + file LICENSE |
| Depends | R (>= 4.4.0) |
| Imports | ExperimentHub |
| System Requirements | |
| URL | https://github.com/AGImkeller/scaeData |
| Bug Reports | https://github.com/AGImkeller/scIGD/issues |
See More
| Suggests | knitr, rmarkdown, markdown, SingleCellAlleleExperiment, Matrix, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | SingleCellAlleleExperiment |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | scaeData_1.0.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/scaeData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/scaeData |
| Package Short Url | https://bioconductor.org/packages/scaeData/ |
| Package Downloads Report | Download Stats |