bam_to_bigwig           Convert a BAM file to a BigWig
bam_to_junctions        Extract junctions from a BAM file
get_coverage            Compute coverage summarizations across a set of
                        regions
install_megadepth       Install Megadepth
megadepth_cmd           Run Megadepth commands
process_junction_table
                        Process junctions into a STAR compatible format
read_coverage           Read a coverage TSV file created by Megadepth
read_junction_table     Read a junction TSV file created by Megadepth
                        as a table
