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GPA

This is the released version of GPA; for the devel version, see GPA.

GPA (Genetic analysis incorporating Pleiotropy and Annotation)


Bioconductor version: Release (3.22)

This package provides functions for fitting GPA, a statistical framework to prioritize GWAS results by integrating pleiotropy information and annotation data. In addition, it also includes ShinyGPA, an interactive visualization toolkit to investigate pleiotropic architecture.

Author: Dongjun Chung, Emma Kortemeier, Carter Allen

Maintainer: Dongjun Chung <dongjun.chung at gmail.com>

Citation (from within R, enter citation("GPA")):

Installation

To install this package, start R (version "4.5") and enter: 


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GPA")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GPA")
GPA PDF R Script
Reference Manual PDF
NEWS Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews Classification, Clustering, DifferentialExpression, GeneExpression, Genetics, GenomeWideAssociation, MultipleComparison, Preprocessing, SNP, Software, StatisticalMethod
Version 1.22.0
In Bioconductor since BioC 3.11 (R-4.0) (5.5 years)
License GPL (>= 2)
Depends R (>= 4.0.0), methods, graphics, Rcpp
Imports parallel, ggplot2, ggrepel, plyr, vegan, DT, shiny, shinyBS, stats, utils, grDevices
System Requirements GNU make
URL http://dongjunchung.github.io/GPA/
Bug Reports https://github.com/dongjunchung/GPA/issues
See More
Suggests gpaExample
Linking To Rcpp
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package GPA_1.22.0.tar.gz
Windows Binary (x86_64) GPA_1.21.0.zip
macOS Binary (x86_64) GPA_1.22.0.tgz
macOS Binary (arm64) GPA_1.22.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/GPA
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/GPA
Bioc Package Browser https://code.bioconductor.org/browse/GPA/
Package Short Url https://bioconductor.org/packages/GPA/
Package Downloads Report Download Stats