## ----install, eval=FALSE------------------------------------------------------ # if (!requireNamespace('BiocManager', quietly = TRUE)) # install.packages('BiocManager') # # BiocManager::install('ExperimentHub') # BiocManager::install('AWAggregatorData') ## ----query datasets----------------------------------------------------------- library(ExperimentHub) eh = ExperimentHub() query(eh, 'AWAggregatorData') # Require Bioconductor version 3.21 or later ## ----download datasets-------------------------------------------------------- # Benchmark Set 1 df = eh[['EH9637']] # Benchmark Set 2 df = eh[['EH9638']] # Benchmark Set 3 df = eh[['EH9639']] # Pre-trained model incorporating the average coefficient of variation (CV) as # a feature regr = eh[['EH9640']] # Pre-trained model excluding CV as a feature regr = eh[['EH9641']] ## ----session info------------------------------------------------------------- sessionInfo()