GO-terms Semantic Similarity Measures

---

Documentation for package ‘GOSemSim’ version 2.37.1

• DESCRIPTION file.
• User guides, package vignettes and other documentation.
• Package NEWS.

Help Pages

buildGOmap	buildGOmap
clusterSim	Semantic similarity between two gene clusters
combineScores	combining similarity matrix to similarity score
geneSim	Semantic similarity between two genes
get_organism	Get organism name from OrgDb object
GO	Information content of GO terms
godata	godata
GOSemSimDATA-class	Class "GOSemSimDATA" This class stores IC and gene to go mapping for semantic similarity measurement
goSim	Semantic similarity between two GO terms
gotbl	Information content of GO terms
go_term_table	Information content of GO terms
infoContentMethod	information content based methods
mclusterSim	Pairwise semantic similarities for a list of gene clusters
mgeneSim	Pairwise semantic similarity for a list of genes
mgoSim	Semantic similarity between two GO term sets
parse_gff	read.gaf
read.blast2go	read.blast2go
read.gaf	read.gaf
show-method	Class "GOSemSimDATA" This class stores IC and gene to go mapping for semantic similarity measurement
tcss_cutoff	determine the topological cutoff for TCSS method
termSim	termSim
wangMethod_internal	wangMethod