- Home
- Bioconductor 3.3
- Software Packages
- OncoScore
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OncoScore")
In most cases, you don't need to download the package archive at all.
OncoScore
|
This package is for version 3.3 of Bioconductor; for the stable, up-to-date release version, see OncoScore.
A tool to identify potentially oncogenic genes
Bioconductor version: 3.3
OncoScore is a tool to measure the association of genes to cancer based on citation frequency in biomedical literature. The score is evaluated from PubMed literature by dynamically updatable web queries.
Author: Daniele Ramazzotti [aut, cre], Luca De Sano [aut], Roberta Spinelli [ctb], Carlo Gambacorti Passerini [ctb], Rocco Piazza [ctb]
Maintainer: Daniele Ramazzotti <daniele.ramazzotti at yahoo.com>
Citation (from within R,
enter citation("OncoScore")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("OncoScore")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OncoScore")
| R Script | OncoScore | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | BiomedicalInformatics, Software |
| Version | 1.0.2 |
| In Bioconductor since | BioC 3.3 (R-3.3) (< 6 months) |
| License | GPL-3 |
| Depends | R (>= 3.3) |
| Imports | biomaRt, grDevices, graphics, utils |
| LinkingTo | |
| Suggests | BiocGenerics, BiocStyle, testthat |
| SystemRequirements | |
| Enhances | |
| URL | https://github.com/danro9685/OncoScore |
| BugReports | https://github.com/danro9685/OncoScore |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | OncoScore_1.0.2.tar.gz |
| Windows Binary | OncoScore_1.0.2.zip |
| Mac OS X 10.9 (Mavericks) | OncoScore_1.0.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/OncoScore/tree/release-3.3 |
| Package Short Url | http://bioconductor.org/packages/OncoScore/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
