| BUS-package | For network reconstruction. | 
| BUS | A wrapper function for matrices of p-value and predicted network | 
| copasi | copasi data | 
| gene.pvalue | Calculates p-value for gene-gene interaction | 
| gene.similarity | Calculate adjacency matrix for gene-gene interaction | 
| gene.trait.pvalue | Calculate p-value for gene-trait interaction | 
| gene.trait.similarity | Calculate similarity for gene-trait interaction | 
| pred.network | Predict the network | 
| tumors.miRNA | miRNA data from Human brain tumors | 
| tumors.mRNA | Gene expression data from Human brain tumors |