CalibraCurve
This is the development version of CalibraCurve; to use it, please install the devel version of Bioconductor.
Calibration curves for targeted proteomics, lipidomics and metabolomics data
Bioconductor version: Development (3.22)
CalibraCurve is a computational tool designed to generate calibration curves for targeted mass spectrometry-based quantitative data. It is applicable to various omics disciplines, including proteomics, lipidomics, and metabolomics. The package also offers functionalities for data and calibration curve visualization and concentration prediction from new datasets based on the established curves.
Author: Karin Schork [aut, cre]
, Robin Grugel [aut], Michael Kohl [aut], Markus Stepath [aut], Martin Eisenacher [aut, fnd]
Maintainer: Karin Schork <karin.schork at rub.de>
citation("CalibraCurve")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("CalibraCurve")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CalibraCurve")| 1. Introduction to CalibraCurve | HTML | R Script |
| 2. Customizing the visualizations of CalibraCurve | HTML | R Script |
| Reference Manual |
Details
| biocViews | Lipidomics, MassSpectrometry, Metabolomics, Proteomics, Regression, Software, Visualization |
| Version | 0.99.2 |
| In Bioconductor since | BioC 3.22 (R-4.5) |
| License | BSD 3-clause License + file LICENSE |
| Depends | R (>= 4.5.0) |
| Imports | checkmate, dplyr, ggplot2, magrittr, openxlsx, scales, SummarizedExperiment, tidyr |
| System Requirements | |
| URL | https://github.com/mpc-bioinformatics/CalibraCurve |
| Bug Reports | https://github.com/mpc-bioinformatics/CalibraCurve/issues |
See More
| Suggests | BiocStyle, knitr, msqc1, RefManageR, rmarkdown, sessioninfo, testthat, vdiffr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | CalibraCurve_0.99.2.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | CalibraCurve_0.99.2.tgz |
| macOS Binary (arm64) | CalibraCurve_0.99.2.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/CalibraCurve |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/CalibraCurve |
| Bioc Package Browser | https://code.bioconductor.org/browse/CalibraCurve/ |
| Package Short Url | https://bioconductor.org/packages/CalibraCurve/ |
| Package Downloads Report | Download Stats |