Changes in version 0.99.15 (2025-09-04) - Updated the README file. Changes in version 0.99.14 (2025-09-04) - Added the FNN package to the Suggests field in the DESCRIPTION file. Changes in version 0.99.13 (2025-09-04) - Updated vignettes/spARI.Rmd. Changes in version 0.99.12 (2025-09-01) - Updated the README file. Changes in version 0.99.11 (2025-08-30) - Removed parallel from the Imports field in the DESCRIPTION file. Changes in version 0.99.10 (2025-08-30) - Deleted system file .Rapp.history Changes in version 0.99.9 (2025-08-30) - Deleted system files Changes in version 0.99.8 (2025-08-30) - Updated the README file - Updated the descriptions of parameters and examples in R functions spARI and perm_test - Updated the code sum_f_vals_total = sum(f_func(dist_mat_Lvec)) to sum_f_vals_total = sum(f_func(dist_mat_Lvec[dist_mat_Lvec != 0])) - Added set.seed() to the example of perm_test when use_parallel = FALSE - Replaced all occurrences of = used for assignment (except in function arguments) with <- Changes in version 0.99.7 (2025-08-07) - Converted spARI_example_data into a list object Changes in version 0.99.6 (2025-08-07) - Updated utils.R file Changes in version 0.99.5 (2025-08-07) - Addressed code styling suggestions (replaced 1:n by seq_len(), replaced sapply by vapply) - Removed usage of set.seed() in package code - Added missing \value{} sections in man pages Changes in version 0.99.4 (2025-08-07) - Removed .DS_Store files in the package Changes in version 0.99.3 (2025-08-07) - Updated the Readme file Changes in version 0.99.2 (2025-08-07) - Subscribed to the Bioc-devel mailing list Changes in version 0.99.1 (2025-07-23) - Generated spARI_example_data.rda in the directory data/ and finished man documenation on the data object - Removed exportPattern("^[[:alpha:]]+") and export explicitly - Removed vignette/spARI.html - Expanded support for SpatialExperiment objects; added spe argument to spARI and perm_test functions - Made spARI compatible with character labels by mapping r_labels and c_labels to numeric factors - Added specific case handling in perm_test for singleton clusters - Changed p-value calculation from >= to > in perm_test, aligning with the paper Changes in version 0.99.0 (2025-07-15) - Submitted to Bioconductor