Changes in version 0.99.16 (2025-09-06)                 

  - Updated vignettes/spARI.Rmd.

                Changes in version 0.99.15 (2025-09-04)                 

  - Updated the README file.

                Changes in version 0.99.14 (2025-09-04)                 

  - Added the FNN package to the Suggests field in the DESCRIPTION file.

                Changes in version 0.99.13 (2025-09-04)                 

  - Updated vignettes/spARI.Rmd.

                Changes in version 0.99.12 (2025-09-01)                 

  - Updated the README file.

                Changes in version 0.99.11 (2025-08-30)                 

  - Removed parallel from the Imports field in the DESCRIPTION file.

                Changes in version 0.99.10 (2025-08-30)                 

  - Deleted system file .Rapp.history

                 Changes in version 0.99.9 (2025-08-30)                 

  - Deleted system files

                 Changes in version 0.99.8 (2025-08-30)                 

  - Updated the README file
  - Updated the descriptions of parameters and examples in R functions
    spARI and perm_test
  - Updated the code sum_f_vals_total = sum(f_func(dist_mat_Lvec)) to
    sum_f_vals_total = sum(f_func(dist_mat_Lvec[dist_mat_Lvec != 0]))
  - Added set.seed() to the example of perm_test when use_parallel =
    FALSE
  - Replaced all occurrences of = used for assignment (except in
    function arguments) with <-

                 Changes in version 0.99.7 (2025-08-07)                 

  - Converted spARI_example_data into a list object

                 Changes in version 0.99.6 (2025-08-07)                 

  - Updated utils.R file

                 Changes in version 0.99.5 (2025-08-07)                 

  - Addressed code styling suggestions (replaced 1:n by seq_len(),
    replaced sapply by vapply)
  - Removed usage of set.seed() in package code
  - Added missing \value{} sections in man pages

                 Changes in version 0.99.4 (2025-08-07)                 

  - Removed .DS_Store files in the package

                 Changes in version 0.99.3 (2025-08-07)                 

  - Updated the Readme file

                 Changes in version 0.99.2 (2025-08-07)                 

  - Subscribed to the Bioc-devel mailing list

                 Changes in version 0.99.1 (2025-07-23)                 

  - Generated spARI_example_data.rda in the directory data/ and finished
    man documenation on the data object
  - Removed exportPattern("^[[:alpha:]]+") and export explicitly
  - Removed vignette/spARI.html
  - Expanded support for SpatialExperiment objects; added spe argument
    to spARI and perm_test functions
  - Made spARI compatible with character labels by mapping r_labels and
    c_labels to numeric factors
  - Added specific case handling in perm_test for singleton clusters
  - Changed p-value calculation from >= to > in perm_test, aligning with
    the paper

                 Changes in version 0.99.0 (2025-07-15)                 

  - Submitted to Bioconductor