Changes in version 1.1.3 - changed the default of the GAM estimation to be a Gaussian with log link for positivty of the response Changes in version 1.1.2 - wrote a new convenience function crossSpatialInference which makes the estimation across a range of cell types easier. Changes in version 1.1.1 - wrote a new convenience function spatialInference which makes the FDA estimation of the spatial statistics functions simpler - in order to do this various changes to prepData were introduced - furthermore, small syntactic changes for the retrieval of the functional intercept were added to functionalGam and plotMdl - The vignette was simplified to reflect the changes in prepData Changes in version 0.99.14 - changed the example in the Vignette to scaled t-dist. with log link due to lower AIC than Gaussian. Changes in version 0.99.13 - changed the example in the vignette to Gaussian with log link and smooth random intercept. Changes in version 0.99.12 - Changed indexing of spatial coordinates to positional index. Names can differ between objects, e.g. "x" or "coord_x" etc. therefore, positional index generalises better. Changes in version 0.99.11 - major changes in fixing the levels of the mark factors in the point pattern. Prior to this fix, it could happen that the marks in selection do not correspond to the marks in the point pattern and therefore give the inverse result. Changes in version 0.99.10 - minor bug fix Changes in version 0.99.9 - remove imcdatasets dependency and instead download example data directly from ExperimentHub - added small reader function .loadExample to download the data mentioned above Changes in version 0.99.8 - more packages explicitly named - vignette shows use of PCA based random errors and exchanged one sample Changes in version 0.99.7 - explicit package naming for functions to make compatible with linux distributions - possible to pass ... parameters to fPCA method Changes in version 0.99.6 - small error correction in show fPCA method Changes in version 0.99.5 - change in how failures in calcMetricPerFov are handled. Works now as well if rSeq = NULL Changes in version 0.99.4 - variable ID is no longer created in calcMetricPerFov - adjusted examples and vignette to the above - added option to extract gene expression directly in calcMetricPerFov if continuous = TRUE - small bug fix in calcMetricPerFov to pass ... in all cases - added variables legend.position and ncol to plotMetricPerFov Changes in version 0.99.3 - adjusted by variable to work with length 1 - adjusted ... in plotMetricPerFov to be passed only to geom_line - adjust examples to build in under 10 min Changes in version 0.99.2 - Rewrote vignette with smaller dataset - Implemented quasi likelihood family in vignette to improve variance estimation - Adjustd calcMetricPerFov.R to be able to calculate cross functions Changes in version 0.99.1 - Adressed Bioconductor review - Added unit tests - Added functional boxplots - Added diagnostic plots to vignette Changes in version 0.99.0 - Initial Bioconductor submission.