## R version 4.5.1 Patched (2025-08-23 r88802)
## Platform: x86_64-pc-linux-gnu
## Running under: Ubuntu 24.04.3 LTS
##
## Matrix products: default
## BLAS: /home/biocbuild/bbs-3.22-bioc/R/lib/libRblas.so
## LAPACK: /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3.12.0 LAPACK version 3.12.0
##
## locale:
## [1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
## [3] LC_TIME=en_GB LC_COLLATE=C
## [5] LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8
## [7] LC_PAPER=en_US.UTF-8 LC_NAME=C
## [9] LC_ADDRESS=C LC_TELEPHONE=C
## [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C
##
## time zone: America/New_York
## tzcode source: system (glibc)
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] BulkSignalR_1.1.5
##
## loaded via a namespace (and not attached):
## [1] RColorBrewer_1.1-3 jsonlite_2.0.0
## [3] shape_1.4.6.1 magrittr_2.0.4
## [5] magick_2.9.0 farver_2.1.2
## [7] rmarkdown_2.30 GlobalOptions_0.1.2
## [9] fs_1.6.6 vctrs_0.6.5
## [11] multtest_2.65.0 memoise_2.0.1
## [13] RCurl_1.98-1.17 ggtree_3.99.0
## [15] rstatix_0.7.2 htmltools_0.5.8.1
## [17] S4Arrays_1.9.1 curl_7.0.0
## [19] broom_1.0.10 SparseArray_1.9.1
## [21] Formula_1.2-5 gridGraphics_0.5-1
## [23] sass_0.4.10 bslib_0.9.0
## [25] htmlwidgets_1.6.4 httr2_1.2.1
## [27] plotly_4.11.0 cachem_1.1.0
## [29] uuid_1.2-1 igraph_2.1.4
## [31] lifecycle_1.0.4 iterators_1.0.14
## [33] pkgconfig_2.0.3 Matrix_1.7-4
## [35] R6_2.6.1 fastmap_1.2.0
## [37] MatrixGenerics_1.21.0 clue_0.3-66
## [39] digest_0.6.37 aplot_0.2.9
## [41] colorspace_2.1-2 patchwork_1.3.2
## [43] S4Vectors_0.47.4 grr_0.9.5
## [45] GenomicRanges_1.61.5 RSQLite_2.4.3
## [47] ggpubr_0.6.1 filelock_1.0.3
## [49] httr_1.4.7 abind_1.4-8
## [51] compiler_4.5.1 withr_3.0.2
## [53] bit64_4.6.0-1 doParallel_1.0.17
## [55] S7_0.2.0 backports_1.5.0
## [57] orthogene_1.15.02 carData_3.0-5
## [59] DBI_1.2.3 homologene_1.4.68.19.3.27
## [61] ggsignif_0.6.4 MASS_7.3-65
## [63] rappdirs_0.3.3 DelayedArray_0.35.3
## [65] rjson_0.2.23 tools_4.5.1
## [67] ape_5.8-1 glue_1.8.0
## [69] stabledist_0.7-2 nlme_3.1-168
## [71] grid_4.5.1 Rtsne_0.17
## [73] cluster_2.1.8.1 generics_0.1.4
## [75] gtable_0.3.6 tidyr_1.3.1
## [77] data.table_1.17.8 car_3.1-3
## [79] XVector_0.49.1 BiocGenerics_0.55.1
## [81] ggrepel_0.9.6 RANN_2.6.2
## [83] foreach_1.5.2 pillar_1.11.1
## [85] yulab.utils_0.2.1 babelgene_22.9
## [87] circlize_0.4.16 splines_4.5.1
## [89] dplyr_1.1.4 BiocFileCache_2.99.6
## [91] treeio_1.33.0 lattice_0.22-7
## [93] survival_3.8-3 bit_4.6.0
## [95] tidyselect_1.2.1 ComplexHeatmap_2.25.2
## [97] SingleCellExperiment_1.31.1 knitr_1.50
## [99] gridExtra_2.3 IRanges_2.43.3
## [101] Seqinfo_0.99.2 SummarizedExperiment_1.39.2
## [103] stats4_4.5.1 xfun_0.53
## [105] Biobase_2.69.1 matrixStats_1.5.0
## [107] lazyeval_0.2.2 ggfun_0.2.0
## [109] yaml_2.3.10 evaluate_1.0.5
## [111] codetools_0.2-20 tibble_3.3.0
## [113] ggplotify_0.1.3 cli_3.6.5
## [115] systemfonts_1.2.3 jquerylib_0.1.4
## [117] dichromat_2.0-0.1 Rcpp_1.1.0
## [119] dbplyr_2.5.1 gprofiler2_0.2.3
## [121] png_0.1-8 parallel_4.5.1
## [123] ggplot2_4.0.0 blob_1.2.4
## [125] ggalluvial_0.12.5 bitops_1.0-9
## [127] glmnet_4.1-10 SpatialExperiment_1.19.1
## [129] viridisLite_0.4.2 tidytree_0.4.6
## [131] ggiraph_0.9.1 scales_1.4.0
## [133] purrr_1.1.0 crayon_1.5.3
## [135] GetoptLong_1.0.5 rlang_1.1.6