| Function | Description |
| binnest | Binary Random Effects Models with Two Levels of Nesting |
| biv.betab | Bivariate Beta-binomial Regression Models |
| biv.binom | Marginal Bivariate Binomial Regression Models |
| capture | Capture-recapture Models |
| catmiss | Marginal Probabilities for Categorical Repeated Measurements with Missing Data |
| chidden | Continuous-time Hidden Markov Chain Models |
| cmcre | Continuous-time Two-state Markov Processes with Random Effect |
| cphidden | Changepoint Location using a Continuous-time Two-state Hidden Markov Chain |
| gar | Generalized Autoregression Models |
| gausscop | Multivariate Gaussian Copula with Arbitrary Marginals |
| glmm | Generalized Linear Mixed Models |
| gnlmix | Generalized Nonlinear Regression with a Random Parameter |
| gnlmm | Generalized Nonlinear Mixed Models |
| gnlmm3 | Generalized Nonlinear Mixed Models for Three-parameter Distributions |
| hidden | Discrete-time Hidden Markov Chain Models |
| hnlmix | Generalized Nonlinear Regression using h-likelihood for a Random Parameter |
| kalcount | Repeated Measurements Models for Counts with Frailty or Serial Dependence |
| kalseries | Repeated Measurements Models for Continuous Variables with Frailty or Serial Dependence |
| logitord | Ordinal Random Effects Models with Dropouts |
| marg.hom | Marginal Homogeneity Models |
| nbkal | Negative Binomial Models with Kalman Update |
| repeated | Non-normal Repeated Measurements Library |