| HTqPCR-package | Analysis of High-Throughput qPCR data (HTqPCR) |
| .readCtBioMark | Reading Ct values from qPCR experiments data into a qPCRset |
| .readCtCFX | Reading Ct values from qPCR experiments data into a qPCRset |
| .readCtLightCycler | Reading Ct values from qPCR experiments data into a qPCRset |
| .readCtOpenArray | Reading Ct values from qPCR experiments data into a qPCRset |
| .readCtPlain | Reading Ct values from qPCR experiments data into a qPCRset |
| .readCtSDS | Reading Ct values from qPCR experiments data into a qPCRset |
| cbind | Combine qPCRset objects |
| cbind.qPCRset | Combine qPCRset objects |
| changeCtLayout | Changing the dimensions (rows x columns) of qPCRset objects |
| clusterCt | Clustering of qPCR Ct values |
| exprs-method | Class "qPCRset" |
| exprs<--method | Class "qPCRset" |
| featureCategory | Class "qPCRset" |
| featureCategory-method | Class "qPCRset" |
| featureCategory<- | Class "qPCRset" |
| featureCategory<--method | Class "qPCRset" |
| featureClass | Class "qPCRset" |
| featureClass-method | Class "qPCRset" |
| featureClass<- | Class "qPCRset" |
| featureClass<--method | Class "qPCRset" |
| featureNames-method | Class "qPCRset" |
| featureNames<--method | Class "qPCRset" |
| featurePos | Class "qPCRset" |
| featurePos-method | Class "qPCRset" |
| featurePos<- | Class "qPCRset" |
| featurePos<--method | Class "qPCRset" |
| featureType | Class "qPCRset" |
| featureType-method | Class "qPCRset" |
| featureType<- | Class "qPCRset" |
| featureType<--method | Class "qPCRset" |
| filterCategory | Filter Ct values based on their feature categories. |
| filterCtData | Filter out features (genes) from qPCR data. |
| flag | Class "qPCRset" |
| flag-method | Class "qPCRset" |
| flag<- | Class "qPCRset" |
| flag<--method | Class "qPCRset" |
| getCt | Class "qPCRset" |
| getCtHistory | Class "qPCRset" |
| heatmapSig | Heatmap of deltadeltaCt values from qPCR data. |
| HTqPCR | Analysis of High-Throughput qPCR data (HTqPCR) |
| limmaCtData | Differentially expressed features with qPCR: limma |
| mannwhitneyCtData | Differentially expressed features with qPCR: Mann-Whitney |
| n.samples | Class "qPCRset" |
| n.wells | Class "qPCRset" |
| normalizeCtData | Normalization of Ct values from qPCR data. |
| plotCtArray | Image plot of qPCR Ct values from an array format |
| plotCtBoxes | Boxplots for qPCR Ct values. |
| plotCtCard | Image plot of qPCR Ct values from a card format |
| plotCtCategory | Summarising the feature categories for Ct values. |
| plotCtCor | Correlation between Ct values from qPCR data |
| plotCtDensity | Distribution plot for qPCR Ct values. |
| plotCtHeatmap | Heatmap of qPCR Ct values. |
| plotCtHistogram | Histrogram of Ct values from qPCR experiments. |
| plotCtLines | Plotting Ct values from qPCR across multiple samples. |
| plotCtOverview | Overview plot of qPCR Ct values across multiple conditions. |
| plotCtPairs | Pairwise scatterplot of multiple sets of Ct values from qPCR data. |
| plotCtPCA | PCA for qPCR Ct values. |
| plotCtReps | Scatter plot of features analysed twice during each qPCR experiment. |
| plotCtRQ | Plot the relative quantification of Ct values from qPCR experiments. |
| plotCtScatter | Scatterplot of two sets of Ct values from qPCR data. |
| plotCtSignificance | Barplot with Ct values between genes from qPCR. |
| plotCtVariation | Plot variation in Ct values across replicates |
| plotCVBoxes | Boxplots of CV for qPCR Ct values. |
| qPCRpros | Example processed qPCR data |
| qPCRraw | Example raw qPCR data. |
| qPCRset-class | Class "qPCRset" |
| rbind | Combine qPCRset objects |
| rbind.qPCRset | Combine qPCRset objects |
| readCtData | Reading Ct values from qPCR experiments data into a qPCRset |
| sampleNames-method | Class "qPCRset" |
| sampleNames<--method | Class "qPCRset" |
| setCategory | Assign categories to Ct values from qPCR data. |
| setCt<- | Class "qPCRset" |
| setCtHistory<- | Class "qPCRset" |
| show-method | Class "qPCRset" |
| summary-method | Class "qPCRset" |
| ttestCtData | Differentially expressed features with qPCR: t-test |
| [-method | Class "qPCRset" |